Template-based Modeling Results for YCIK_ECOLI

Submitted Primary Sequence

>Length 252
MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ
CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHHCCCCCCEEEECCCCCCCCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ
553314332232100000000200020001000421020000011331022002102522133020000002212231023002200320130000000000112101023132300220020002001100000011115242000000000002201121000000100010001000220232010000000003021001013223132122011001000000012122210100001211322234
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ
1	MUSTER	1fmcA	0.241	0.972	2.225	threading_1	MFNSDNLR-LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ---AFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPF--DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGKNIRVNGIAPGAILTDALKSVITHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN-
2	SPARKS	3pk0a	0.302	0.972	1.978	threading_2	----GSMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGK--VIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLAT-MTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGITGYPGWSHYGATKAAQLGFMRTAAIELAHKITVNAIMPGNIMTEYIASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVLAIAT
3	PROSPECT2	1iy8a	0.228	0.956	3.357	threading_3	--------RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAE-VLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRGIRINAIAPGAIWTPMVENSMQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSAA--Y
4	PPA-I	1fmcA	0.241	0.972	1.777	threading_4	MFNSDNLR-LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ---AFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPF--DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGKNIRVNGIAPGAILTDALKSVITHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN-
5	HHPRED-l	1yxm_A	0.195	0.976	1.459	threading_5	--YLA-PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQ-FLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIV-PTKAGFPLAVHSGAARAGVYNLTKSLALEWACGIRINCVAPGVIYSQTAVENYQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSLYTP-
6	HHPRED-g	3ak4_A	0.262	0.940	1.294	threading_6	-----GIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGG------FAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMR-PAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPNIRVNCVCPGFVKTAMQERYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGVRMD---
7	SP3	3pk0a	0.294	0.972	2.020	threading_7	----GSMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGK--VIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLAT-MTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGITGYPGWSHYGATKAAQLGFMRTAAIELAHKITVNAIMPGNIMTEGLEEYIASIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVLAIAT
8	SAM-T99	2uvdA	0.254	0.937	1.348	threading_8	--------MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNAGNEQKANEVVDEIKKLGSD---AIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGV-TKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASNITVNAIAPGFIATDMKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGMVM----
9	MUSTER	1nfqA	0.230	0.948	2.210	threading_9	------SGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD------AARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIED-YALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPGIRVNSIHPGLVKTPMTDWVPEQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAH
10	SPARKS	3nuga	0.250	0.937	1.970	threading_10	------TERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI------GKKARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDD-VDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGYNITANAVTPGLIESDGVKASPHLQAMKGKGQPEHIADVVSFLASDDARWITGQTLNVDAGMVRH---

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.958 to 1fmcA TM-score=0.876 to native SCOP code=c.2.1.2	TM-score=0.954 to 2c07A TM-score=0.869 to native SCOP code=c.2.1.2	TM-score=0.907 to 1vl8B TM-score=0.855 to native SCOP code=c.2.1.2	TM-score=0.935 to 1iy8A TM-score=0.896 to native SCOP code=c.2.1.2	TM-score=0.958 to 1fmcA TM-score=0.876 to native SCOP code=c.2.1.2

Experimental Structure

Download 3f1lA

SCOP code=c.2.1.2