Template-based Modeling Results for YCJR_ECOLI

Submitted Primary Sequence

>Length 262
MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACGGYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDGDRKMVSDSLRVLEQVAARTGTVVYLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDFYHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYEGRIRAEDPAQAYRDSLAWLRTC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACGGYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDGDRKMVSDSLRVLEQVAARTGTVVYLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDFYHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYEGRIRAEDPAQAYRDSLAWLRTC
CEEEEEEHHCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACGGYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDGDRKMVSDSLRVLEQVAARTGTVVYLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDFYHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYEGRIRAEDPAQAYRDSLAWLRTC
1110001100133202210210340102001010311231032012004412020000000131111221331122003102200200140102000000111112231122222322310131003002100300351202000100122321101102101300230313101000000000023310120022034100000001232111020201031002003314130000010112232122003201200331
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEVKAAIKETGLPVTTACGGYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAWGMFTFRLPPMTSPRSLDGDRKMVSDSLRVLEQVAARTGTVVYLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDFYHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGTLDFHALFEQLRADNYQGYVVYEGRIRAEDPAQAYRDSLAWLRTC
1	MUSTER	2zvrB	0.255	0.958	2.444	threading_1	MKLSLVISTSDKGDLRKGMELAKRVGYQAVEIAVRDSIVDWNEVKILSEELNLPICAIGTGQGLSLTHPNDEIRKKAIERVVKHTEVAGMFGALVIIGLVRG---------RREGRSYEETEELFIESMKRLLELTE--HAKFVIEPLNRYETDFINTIDDALRILRKINSNRVGILADTFHMNIEEVNIPESLKRAGEKLYHFHVADSNRWAPGCGHFDFRSVFNTLKEIGYNRYVSVECLPLPGGMEEAAEIAFKTLKEL
2	SPARKS	1k77a	0.184	0.935	3.545	threading_2	PRFAANLS-FTEVPFIERFAAARKAGFDAVEFLFPYN-YSTLQIQKQLEQNHLTLALFNTAPGDINASALPGREHEAHADIDLALEYALALNCEQVHVAGV----------VPAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPKPHYLFSSQYQALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGPDRHEPDDGEINYPWLFRLFDEVGYQGWIGCEYKPRGL-----TEEGLGWFDAW
3	PROSPECT2	2zvrA	0.255	0.958	3.737	threading_3	MKLSLVISTSDFKDLRKGMELAKRVGYQAVEIAVRDSIVDWNEVKILSEELNLPICAIGTGDGLSLTHPNDEIRKKAIERVVKHTEVAGMFGALVIIGLVR---------GRREGRSYEETEELFIESMKRLLELTEHAK--FVIEPLNRYETDFINTIDDALRILRKINSNRVGILADTFHMNIEEVNIPESLKRAGEKLYHFHVADSNRWAPGCGHFDFRSVFNTLKEIGYNRYVSVECLPLPGGMEEAAEIAFKTLKEL
4	PPA-I	2zvrB	0.255	0.958	2.698	threading_4	MKLSLVISTSDKGDLRKGMELAKRVGYQAVEIAVRDPSIDWNEVKILSEELNLPICAIGTGQGLSLTHPNDEIRKKAIERVVKHTEVAGMFGALVIIGLVRG---------RREGRSYEETEELFIESMKRLLELT--EHAKFVIEPLNRYETDFINTIDDALRILRKINSNRVGILADTFHMNIEEVNIPESLKRAGEKLYHFHVADSNRWAPGCGHFDFRSVFNTLKEIGYNRYVSVECLPLPGGMEEAAEIAFKTLKEL
5	HHPRED-l	2hk0_A	0.239	0.958	2.669	threading_5	-KHGIYYSYWEHAKFGPYIEKVAKLGFDIIEVAAEYSDAELATIRKSAKDNGIILTAGIGPSTKNLSSEDAAVRAAGKAFFERTLSNVAKLDIHTIGGALHSYWP----IDYSQPVDKAGDYARGVEGINGIADFANDLGINLCIEVLNRFENHVLNTAAEGVAFVKDVGKNNVKV-LDTFH-NIEEDSFGDAIRTAGPLLGHFHTGESNRRVPGKGR-PWHEIGLALRDINYTGAVI-EPFVKTAK-DEDARNALAFSRF-
6	HHPRED-g	1k77_A	0.193	0.931	3.132	threading_6	PRFAANLS--FTEPFIERFAAARKAGFDAVEFLFPYNY-STLQIQKQLEQNHLTLALFNTAPGDIGLSALPGREHEAHADIDLALEYALALNCEQVHV-AGV---------VPAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGPHYLFSSQYQALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGPDRHEPDDGEINYPWLFRLFDEVGYQGWIGCEYKPRGL-----TEEGLGWFDAW
7	SP3	1k77a	0.184	0.935	4.099	threading_7	PRFAANLS-FTEVPFIERFAAARKAGFDAVEFLFPYN-YSTLQIQKQLEQNHLTLALFNTAPGDIGLSALPGREHEAHADIDLALEYALALNCEQVHVAGVV----------PAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGPHYLFSSQYQALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGPDRHEPDDGEINYPWLFRLFDEVGYQGWIGCEYKPRGL-----TEEGLGWFDAW
8	SAM-T99	3ngfA	0.193	0.931	4.379	threading_8	PRFAANLTMFNEVPFLERFRLAAEAGFGGVEFLFPYDF-DADVIARELKQHNLTQVLFNMPPGDWAAGERSGREQEFRDNVDIALHYALALDCRTLHAMSGITE----------GLDRKACEETFIENFRYAADKLAPHGITVLVEPLNNMPGYFIVHQLEAVGLVKRVNRPNVAVQLDLYHAQIMDGDLTRLIEKMNGAFSHVQIASPDRHEPDEGELNYPYLFSVLESVGYRGWVGCEYNPRGKTESGLAWFA-------
9	MUSTER	3ngfA	0.215	0.939	2.408	threading_9	PRFAANLSTMFNEPFLERFRLAAEAGFGGVEFLFPY-DFDADVIARELKQHNLTQVLFNMPPGDWGMAAISGREQEFRDNVDIALHYALALDCRTLHAMSG----------ITEGLDRKACEETFIENFRYAADKLAPHGITVLVEPLNTMPGYFIVHQLEAVGLVKRVNRPNVAVQLDLYHAQIMDGDLTRLIEKMNGAFSHVQIASPDRHEPDEGELNYPYLFSVLESVGYRGWVGCEYNPRGK-----TESGLAWFAPY
10	SPARKS	2ou4a	0.236	0.989	3.380	threading_10	NKVGMFYTYWSTEDFPATAKRIAGLGFDLMEISLNLSDAKKRELKAVADDLGLTVMCCILKSEYDFASPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQ---SPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYALEVVNRFEQWLCNDAKEAIAFADAVDSPACKVQLDTFHMNIEETSFRDAILACKGKMGHFHLGEANRLPPGEGRLPWDEIFGALKEIGYDGTIVMEPFMRKGGMDERARRSLQFVRDK

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.838 to 1k77A SCOP code=c.1.15.5	TM-score=0.839 to 1k77A SCOP code=c.1.15.5	TM-score=0.933 to 1k77A SCOP code=c.1.15.5	TM-score=0.839 to 1k77A SCOP code=c.1.15.5	TM-score=0.838 to 1k77A SCOP code=c.1.15.5