Template-based Modeling Results for YCJW_ECOLI

Submitted Primary Sequence

>Length 332
MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEELQYQPNKLARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQTSHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWIVDGGYTHETALKAARQLLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQELGQQSCELLFRLISGKPSPQNITVATHMTLK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEELQYQPNKLARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQTSHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWIVDGGYTHETALKAARQLLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQELGQQSCELLFRLISGKPSPQNITVATHMTLK
CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEELQYQPNKLARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQTSHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWIVDGGYTHETALKAARQLLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQELGQQSCELLFRLISGKPSPQNITVATHMTLK
45111310032031021000200253231233013101300430212012101001221120000000312222121000010020012103422110000103322310230012023220200000013123200210252300000002232322301000001100010001000410021000000122131011102001200341502043100020112131012002300322321100000001100000200232412002100000001110020010200002010220021001000210233323321202110123
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEELQYQPNKLARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQTSHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWIVDGGYTHETALKAARQLLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQELGQQSCELLFRLISGKPSPQNITVATHMTLK
1	MUSTER	1zvvA	0.298	0.982	3.130	threading_1	MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDIS-----NIFYAELARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIE-STNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVSSIVELPHRIEFR
2	SPARKS	3h5ta	0.187	0.949	3.374	threading_2	QYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYAG-------------AIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVD-HVSAQQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQ-PAREEGMPFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDYQVQRDRVRGAMEVFIEAGIDPGTVPIMECINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMALA--RDLTTVIQPNKLKGFKAGETLLKMIDKEYVEPEVELETSFHPG
3	PROSPECT2	1vpwa	0.309	0.976	4.394	threading_3	---TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSMKVNHTKSIGLLATSSE-----AAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREPQSIEVHPRLIER
4	PPA-I	1zvvA	0.298	0.982	3.843	threading_4	MNVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDIS-----NIFYAELARGIEDIASMYKYNIILSNSDQNQDKQLHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIE-STNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVSSIVELPHRIEFR
5	HHPRED-l	2hsg_A	0.296	0.967	2.898	threading_5	-NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASK-TTTVGVIIP-------SNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASI-ESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPNHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVSSIVQLPHRIEF-
6	HHPRED-g	2hsg_A	0.298	0.970	2.172	threading_6	-NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASK-TTTVGVIIP--S-----NIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIE-STNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPNHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMNKETVDSSVQLPHRIEFR
7	SP3	3kjxa	0.243	0.943	3.697	threading_7	-PLTLRDVSEASGVS-ETVSRVLRNRGDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSL------SNVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEL-SWRPSGVIIAGLEHS-EAARALDAAGIPVVEIDS---DGKPVDAVGISHRRAGREA-QAILKAGYRRIGFGTKPLD-YRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGRETQ--ALERSPDLDFLYYSND-IAAGGLLYLLEQGIDIPGQIGLAGFNNVELLQGLPRKLATD-ACRLEIGRKAAEIIAKRLEDPEIETRITLEPKISYG
8	SAM-T99	1jh9A	0.305	0.979	4.044	threading_8	--ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATS-----SEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYHIPMVVMDRGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRINKREEPQSIEVHPRLIER
9	MUSTER	1jh9A	0.311	0.979	3.017	threading_9	--ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSE-----AAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYHIPMVVMDRGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKEEPQSIEVHPRLIER
10	SPARKS	1rzrg	0.301	0.952	3.366	threading_10	-NVTIYDVAREASVS-ATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDIS-----NIFYAELARGIEDIA-TYKYNIILSNSDQNQDKELHLLN-NLGKQVDGIIFSG-NVTEEHVEELKKSPVPVVLAASIEST-NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPIHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTD-EALGVIHGAQDRGLNVPNDLEIIGFDNTRLST-VRPQLTSVVQPY-DIGAV--ARLLTKYNKETVDSSIVLPHRIEFR

Predicted Tertiary Structure


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TM-score=0.959 to 1zvvA SCOP code=a.35.1.5	TM-score=0.954 to 1zvvA SCOP code=a.35.1.5	TM-score=0.757 to 1bykA SCOP code=c.93.1.1	TM-score=0.944 to 1jh9A SCOP code=a.35.1.5	TM-score=0.959 to 1zvvA SCOP code=a.35.1.5