Template-based Modeling Results for YDAM_ECOLI

Submitted Primary Sequence

>Length 410
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
CCHHHHHHHHHCCCCEEEEECCCCEEEEECHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECHHHHHHHCCCHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
44230120121011000000123110000020003113112122122112222223102300210234331010000113433100102010120132320000210111011012112112223422100120131211000000012301000003001301202231004220220122133112002101223223220100021331211101000000212333000000000221331131011002112011010011012002200220233332000000001203101011001000100100030023002410000101121000002302231011002100200241212222200000000103234103200210020012023323310012
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLAA
1	MUSTER	2v0nA	0.221	0.961	1.677	threading_1	DIEANVRLLEAK------LTAEYYEVSTAMPTALAMAARDLPDII---LDVMMPGMDGFTVCRKLKDDPTTVVLITALDGRGDRIQGLESGASDFLTKP--IDDVMLFARVRSLTRFKLVIDELRQREASGRRMLDGLGGRVLIVDDNERQA-----QRVAAELGVEHRPVIESDPEKAKAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKAVNDILSRPDPQELSARVKTQIQRKRYTDYLRNNLDHDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGAHGREMLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVGK
2	SPARKS	3i5aa	0.280	0.759	4.036	threading_2	---------------------------------------------SAMVLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQA--------IAQAVQIKPTVILQDLVMPGLDGLTLVREYRSNPL----------TRDIPIIVLSTKEDPLIK---SAAFAA-GANDYLVKLPDNIELVARIRYHSRSYMTLLQRDEAYRALRVS--------------------------------QQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGDEALRQVAKAIRNSCRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGIAPVPGSSLTVSIGVATVTVGQHSRQLILDADKGLYLAKNNGRNQVAAG
3	PROSPECT2	1w25A	0.232	0.924	3.394	threading_3	SARLLEAKLTA----------EYYEVSTAMDGPTAL------AMAARVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLEASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREAERQAQRVAAELGVEHRPVIESDGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPDPDDRGRMVKALE---------------IGVNDILSRPIDPQELSARKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFREMLNVTISIGVSATGEGDTPEALLKRADEGVYQAKASGRNAVVGK
4	PPA-I	3pjwA1	0.253	0.424	3.061	threading_4	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AALFQEQAERSEKLRTESYQDNLTGLANRRYFEMQLNARVSNPEQASS-GYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECETQNLVTRIRGGEFAVLAPGMTREEALQLAQSLDSALSSLYAATDVAAVASIGLAPFAHGDSPQAVLSLGDQALAQAEGQGEQNWACL
5	HHPRED-l	1w25_A	0.231	0.941	5.145	threading_5	------------SARILVVDDEYYEVSTAMDTALAMAADLPDIILLDVMMPGMDGFTVCRKLKDDPTTHIPVVLITAL-DGRGDRI-------QGLESGASD-FLTKPIDDVLFARVRSLTRFKLVIDELRQRMGVIAGAAARL--DGLGGRVLIVDDNERQAQRSDPEKISAGPVDLAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRVNDILSRPIDPQEVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGPFVAGRLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVG-
6	HHPRED-g	1w25_A	0.218	0.951	3.770	threading_6	NVRLLEAKLTAEYY----------EVSTAMDGPTALA-MAARDLPDIILLDVMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDR---IQGLE-SG-ASDFLTKPVMLFARVRFKLVIDELRQREASGRRMGVIAGAAARLDG--LGGRVLIVDDNERQAQRVAAEKISAGGPVDLAAKNFDGL--RFTAALRSEERTRPVLAMVDPDDRGRVNDILSRPIDPQELKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSSPFTVARLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVGK
7	SP3	1w25a	0.204	0.956	4.226	threading_7	DGPTALAMAARDLPDIILLDGMDGRKLKDDPTTRHITALDGRGDRIQGLESPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLI--------VDDNERQAQRVAAELGVEHRPVIESDPEKAKISA-GGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP---------VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFREMLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVGK
8	SAM-T99	2v0nA	0.257	0.807	4.342	threading_8	------------SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALD------GRGDRIQGLESGASDFL-----------------------------------------------------------TKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQRVAAELGELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFREMLNVTISIGVSATAGGDTPEALLKRADEGVYQAKASGRNAVV--
9	MUSTER	3breB	0.247	0.751	1.587	threading_9	-----------APL------DGAVMVLLVD-----------------------DQAMIGEAVRRSLASEAGIDFHFCSDPQQA--------VAVANQIKPTVILQDLVMP---GVDGLTLLAAYRGNPA-------TRDIPIIVLSTKEEPTVK---SAAFAA-LPDAIELVARIRYHSRSYIALQQRDEAYRALRES----------------------------------------QQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESDQPRPGSHLTVSIGVSTLGGGQTFRVLIEMADQALYQAKNNGRNQVGLM
10	SPARKS	1w25a	0.230	0.924	3.976	threading_10	VCRKLKDDPTTRHIPVVLITALDGR-----GDRIQGLESGASDFLTKPI----DDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVD---------DNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTVLAMVDPDDRGRMVKALEIGVND-----ILSRPIDPQELSARV--------KTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFREMLNVTISIGVSATAEGDTPEALLKRADEGVYQAKASGRNAVVGK

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.640 to 2v0nA SCOP code=c.23.1.1	TM-score=0.766 to 2v0nA SCOP code=c.23.1.1	TM-score=0.600 to 2v0nA SCOP code=c.23.1.1	TM-score=0.644 to 2v0nA SCOP code=c.23.1.1	TM-score=0.573 to 2v0nA SCOP code=c.23.1.1