Template-based Modeling Results for YDBC_ECOLI

Submitted Primary Sequence

>Length 286
MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE
CCCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECHHHCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE
5521212212120020010002010201111232231001002200310010000020012311020022003221310000000012223222122100121013001200320222000000000111223022302031002002202430101000002010210110241020000001111133212200300242200000000012121231210120032130100000000003223100001111212102200301303013300220221255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE
1	MUSTER	1ynpB	0.250	0.951	2.931	threading_1	MKKRQLGTSDLHVSELGFGCMSLG--------TDETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKVGNRFEQGKGWWWDPSKAYIKEAVKDSLRRLQTDYIDLYQLHGGTID------DPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRDELKLLRESTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEAPLTAEERQHIQKLAKA
2	SPARKS	3erpa	0.212	0.958	4.457	threading_2	MEYRRCGRSGVKLPAISLGLWHN-----FGDTTRVENSRALLQRAFDLGITHFDLANNYGPGSAECNFGRILQEWRDELIISTKAGYTMW-DGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPE------TPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDITPCLIHQPKYSLFERWVEGLLALLQEKGVGSIAFSPLAGGQLTDRRRLNELAARRGQKLSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLNRRFSAAECAEIDAILEG
3	PROSPECT2	3n2tA	0.213	0.969	3.942	threading_3	MASDTIRIPDTPLSRVALGTWAIGGW--MWGGPDDDNGVRTIHAALDEGINLIDTAPVYGFGHSEEIVGRALAEKPNKAHVATKLGLHWVGEDEKNMDSRPARIRKEVEDSLRRLRVETIDLEQIHWPDDK------TPIDESARELQKLHQDGKIRALGVSNFSPEQMDIFREVAPLATIQPPLNLFERTIEKILPYAEKHNAVVLAYGALGKMNRDTTDEFEKLAEKRGKSVMAFAVRWVLDQ-GPVIALWGARKPGQVSGVKDVFGWSLTDEEKKAVDDILAR
4	PPA-I	1ynpB	0.246	0.951	4.988	threading_4	MKKRQLGTSDLHVSELGFGCMSLGT--------DETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKVGNRFEQGEGWWWDPSKAYIKEAVKDSLRRLQTDYIDLYQLHGGTID------DPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRLKLLRESLPTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEATLTAEERQHIQKLAKA
5	HHPRED-l	1ynp_A	0.249	0.899	2.779	threading_5	MKKRQLGTSDLHVSELGFGCMSLGT--------DETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKV--------------SKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDD------PIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPKLLRESLPTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEAPLTAEERQHIQKLAK-
6	HHPRED-g	1pyf_A	0.255	0.962	2.365	threading_6	-KKAKLGKSDLQVFPIGLGTNAVGGHN-LYPNLNEETGKELVREAIRNGVT-LDTAYIYGIGRSEELIGEVLREFREDVVIATKAAHRKQG-NDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEH------TPKDEAVNALNE-KKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAETFFPYTKEHNISFIPYFPLVSGLLAGKNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFAP
7	SP3	3erpa	0.212	0.958	4.585	threading_7	MEYRRCGRSGVKLPAISLGLWHN-----FGDTTRVENSRALLQRAFDLGITHFDLANNYGPPSAECNFGRILQEDRDELIISTKAGYTM-WDGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPE------TPLKETMKALDHLVRHGKALYVGISNYPADLARQAIDITPCLIHQPKYSLFERWVEGLLALLQEKGVGSIAFSPLAGGQLTDRRRLNELAARRGQKLSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLNRRFSAAECAEIDAILEG
8	SAM-T99	1pz0A	0.255	0.958	3.537	threading_8	-KKAKLGKSDLQVFPIGLGTNAVGGHNLY-PNLNEETGKELVREAIRNGVT-LDTAYIYGIGRSEELIGEVLREFREDVVIATKAAHRKQGND-FVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDE------HTPKDEAVNALNE-KKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAETFFPYTKEHNISFIPYFPLVSGLLAKVNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFA-
9	MUSTER	1pz0A	0.255	0.962	2.882	threading_9	-KKAKLGKSDLQVFPIGLGTNAVGGHN-LYPNLNEETGKELVREAIRNGVTL-DTAYIYGIGRSEELIGEVLREFREDVVIATKAAHRK-QGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEH------TPKDEAVNALNEK-KAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREEKTFFPYTKEHNISFIPYFPLVSGLLAGKNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFAP
10	SPARKS	1pyfa	0.251	0.962	4.265	threading_10	-KKAKLGKSDLQVFPIGLGTNAVGGHNLY-PNLNEETGKELVREAIRNGVT-LDTAYIYGIGRSEELIGEVLREFREDVVIATKAAHRK-QGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEH------TPKDEAVNALN-EKKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAETFFPYTKEHNISFIPYFPLVSGLLAGKNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFAP

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.869 to 1pz0A SCOP code=c.1.7.1	TM-score=0.868 to 1pz0A SCOP code=c.1.7.1	TM-score=0.837 to 1ur3M SCOP code=c.1.7.1	TM-score=0.853 to 1pz0A SCOP code=c.1.7.1	TM-score=0.867 to 1pz0A SCOP code=c.1.7.1