Template-based Modeling Results for YDFJ_ECOLI

Submitted Primary Sequence

>Length 427
MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
4111000000000012000141020000000000000000010000000010012102120000000000000001000010110000000000000001000121101000000021024231000000010010001000000000011001332033001100000000000000002121430321231232233222201100121132001000010010000000000000001210313321000000000000000010001002211231010000000001000010102332112000000000000000000000000000210213120000000110000001000000000002113220000000000000000000201312333122233123322322422332434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
1	MUSTER	1pw4A	0.154	0.913	1.822	threading_1	F-LGIFFGYAAYYLVRKNFA----AMPYLVDLGFALSGISIA-FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-------DWHALYMPAFCAILVALFAFAMMRDTPQLPPIEEYKNAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVGNRGATGVFFMTLVTIATIVYWM---NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP---------------
2	SPARKS	1pw4a	0.149	0.911	3.949	threading_2	LVRKNFALAMPY-LVEQGFSRGD--LGFALSGISIAYGFSK-----FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHA------ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDTAKQIFMQYVKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP-------------------
3	PROSPECT2	1pw4A	0.153	0.920	2.821	threading_3	FKFFGYAAYAMPYLVEQGFSRGD----LGFALSGISIAYG---FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-------DWHAALYMPAFCALVALFAFAMMRDTPQSCGLPPIEEYKNDTAKQIFMQYVKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT-IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK---------------RRHEQLLQELVP
4	PPA-I	1pw4A	0.141	0.927	3.794	threading_4	IFLGIFFGYAAYYLVRKNF----ALAMPYDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV----PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-------DWHALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDTAKQIFMQYNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG-NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP---------------
5	HHPRED-l	1pw4_A	0.158	0.902	5.016	threading_5	LVRKNFALAMPYL-VE--QGFSRGDLGFALSGI-----SIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS----IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH---AALYMPAFCAILVALFAFAMMRDTPQSC-----------TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRH-EQLLQELVP--------------
6	HHPRED-g	3o7q_A	0.108	0.871	5.159	threading_6	VANNLNDILLPQF-QQAF-TLTNFQAGLIQSA-----FYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFAEIMNY--------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNSPEQLSVLSVQTPYMIIVAIVLLVAIMLTKFPALQSDNHSDAKQGSFSASLSRLA-RI-RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA--FAG----GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSF-I-VMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQT----------------------------
7	SP3	1pw4a	0.149	0.930	3.374	threading_7	IDRLRWQIFLGIFFGYAAYYLVRKNFALAMPGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-------NDWHALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDTAKQIFMQYVKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMGEKRRHELQELVP------------------
8	SAM-T99	2gfpA1	0.153	0.429	1.522	threading_8	-----------------------------------------------------------------LLLMLVLLVAVG------------------------------------------------------------------------------------------------------------------------------QMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVS-----------------------QLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS-------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA-----------------------
9	MUSTER	1pv6A	0.141	0.913	1.433	threading_9	LFFFFYFFIMGAYFP--FFP-HDINISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGG--IYLGFCFNAGAPAVEAFIEKVS--RRSNFFG-RARMFGCVGWALGASIVGIMFTI------NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFTATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS------SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG---FQGAYLVLGLVALGFTLISVF------LSGPGPLSLLRRQVNEVA------
10	SPARKS	2gfpa	0.136	0.845	2.591	threading_10	MAQTIYIPAIADMARD--LNVREGAVQSVMGAYLLTYGVSQ-----LFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTV--------LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT--------MWNWRACYLFLLVLCAGVTFSARWMPET---RPVDAPRTRLLTSYKTLFGN--SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWF---GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT---GQGSLGLLMTLMGLLIVLCWLPL-------------------------------

Predicted Tertiary Structure


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TM-score=0.876 to 1pw4A SCOP code=f.38.1.1	TM-score=0.875 to 1pw4A SCOP code=f.38.1.1	TM-score=0.867 to 1pw4A SCOP code=f.38.1.1	TM-score=0.868 to 1pw4A SCOP code=f.38.1.1	TM-score=0.887 to 1pw4A SCOP code=f.38.1.1