Template-based Modeling Results for YEDS_ECOLI

Submitted Primary Sequence

>Length 397
MKRKVLAMLVPALLVAGAANAAEVYNKDGNKLDLYGKVVGLHYFSDDSGSDGDMSYARIGFKGETQIADQFTGYGQWEFNIGANGPESDKGNTATRLAFAGLGFGQNGTFDYGRNYGVVYDVEAWTDMLPEFGGDTYAGADNFMNGRANGVATYRNNGFFGLVDGLNFALQYQGNNESGGPFGQEGSGSGDGRSLSKENGDGFGMSTSYDFDFGLSLGAAYXNSDRSDRQVGVGLNDRNHSNRNAGGETAEAWTVGAKYDANNVYLAAMYAETRNMTPYGGGEFDNGESRSAIANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGWAHDGNGDPRYTNKDLVKYVDIGATYYFNKNMSTYVDYKINLLDNDDDFYEANGIATDDIVAVGLVYQF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRKVLAMLVPALLVAGAANAAEVYNKDGNKLDLYGKVVGLHYFSDDSGSDGDMSYARIGFKGETQIADQFTGYGQWEFNIGANGPESDKGNTATRLAFAGLGFGQNGTFDYGRNYGVVYDVEAWTDMLPEFGGDTYAGADNFMNGRANGVATYRNNGFFGLVDGLNFALQYQGNNESGGPFGQEGSGSGDGRSLSKENGDGFGMSTSYDFDFGLSLGAAYXNSDRSDRQVGVGLNDRNHSNRNAGGETAEAWTVGAKYDANNVYLAAMYAETRNMTPYGGGEFDNGESRSAIANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGWAHDGNGDPRYTNKDLVKYVDIGATYYFNKNMSTYVDYKINLLDNDDDFYEANGIATDDIVAVGLVYQF
CCHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEEEEEEEECEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRKVLAMLVPALLVAGAANAAEVYNKDGNKLDLYGKVVGLHYFSDDSGSDGDMSYARIGFKGETQIADQFTGYGQWEFNIGANGPESDKGNTATRLAFAGLGFGQNGTFDYGRNYGVVYDVEAWTDMLPEFGGDTYAGADNFMNGRANGVATYRNNGFFGLVDGLNFALQYQGNNESGGPFGQEGSGSGDGRSLSKENGDGFGMSTSYDFDFGLSLGAAYXNSDRSDRQVGVGLNDRNHSNRNAGGETAEAWTVGAKYDANNVYLAAMYAETRNMTPYGGGEFDNGESRSAIANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGWAHDGNGDPRYTNKDLVKYVDIGATYYFNKNMSTYVDYKINLLDNDDDFYEANGIATDDIVAVGLVYQF
4322100100000000000110101233312010101010001012222231322100000202220232010001010100122332342222010000001123101010010100000010000011210011110111111021101010112111211300000010203232212123312111202212332120000000011311000000002132233311111222221221211210100000020102201000000102011111112012132321100201001000101021001100001112133221222202122422332102000000101014101000101001133333113222222311000000021
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRKVLAMLVPALLVAGAANAAEVYNKDGNKLDLYGKVVGLHYFSDDSGSDGDMSYARIGFKGETQIADQFTGYGQWEFNIGANGPESDKGNTATRLAFAGLGFGQNGTFDYGRNYGVVYDVEAWTDMLPEFGGDTYAGADNFMNGRANGVATYRNNGFFGLVDGLNFALQYQGNNESGGPFGQEGSGSGDGRSLSKENGDGFGMSTSYDFDFGLSLGAAYXNSDRSDRQVGVGLNDRNHSNRNAGGETAEAWTVGAKYDANNVYLAAMYAETRNMTPYGGGEFDNGESRSAIANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGWAHDGNGDPRYTNKDLVKYVDIGATYYFNKNMSTYVDYKINLLDNDDDFYEANGIATDDIVAVGLVYQF
1	SPARKS	1hxxa	0.370	0.836	8.688	threading_1	---------------------AEIYNKDGNKVDLYGKAVGLHYFSKGNGENGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAGNKTRLAFAGLKYADVGSFDYGRNYGVVFDALGYTDMLPEFGGDTA-YSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNE--------------RDTARRSNGDGVGGSISYEYE-GFGIVGAYAADRTNLQEA---------QPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITN----KFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEG----------IGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDN----KLGVGSDDTVAVGIVYQF-
2	PROSPECT2	3nsgA	0.533	0.836	3.831	threading_2	----------------------EIYNKDGNKLDLYGKAVGRHVWTTTGDKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDAPYFSGETWGGAYTDNYTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNH---------------SINSQNGDGVGYTAYEFDGFGVTAAYSNSKRTNDQ----------QDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNSIVENT------VTDTVEANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNG---------AGGSADLAKYIQAGATYYFNKNN-VWVDYRFNLLDEND--YSSSYVGTDDQAAVGITYQF
3	PPA-I	2ixxA	0.401	0.879	2.835	threading_3	---------------------AEVYNKDGNKLDLYGKVDGLHYFSDDKSVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNAPESE-NNSWTRVAFAGLKFQDIGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYG-SDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGQNGSVSGENDGHGITNNGRKALRQNGDGVGGSITYDYE-GFGVGAAVSSKRTWDQNNTG--------LIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGS---------LGWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLG-----VVAGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLD-DNQFTRAAGINTDDIVALGLVYQF-
4	HHPRED-l	2j1n_A	0.638	0.869	5.745	threading_4	---------------------AEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAE-NENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYG-SDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYE-GFGIGGAISSSKRTDAQN--------TAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVG---------SLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGR---------GYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDN-QFTRDAGINTDNIVALGLVYQ-
5	HHPRED-g	2j1n_A	0.639	0.872	5.816	threading_5	---------------------AEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENE-NNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYG-SDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYE-GFGIGGAISSSKRTDAQNTAA--------YIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGS---------LGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGR---------GYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDD-NQFTRDAGINTDNIVALGLVYQF
6	SP3	1hxxa	0.370	0.836	7.444	threading_6	---------------------AEIYNKDGNKVDLYGKAVGLHYFSKGNGENGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQNKTRLAFAGLKYADVGSFDYGRNYGVVFDALGYTDMLPEFGGDTAY-SDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNE--------------RDTARRSNGDGVGGSISYEYE-GFGIVGAYAADRTNLQEAQPLG---------NGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKF----TNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEG----------IGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKL----GVGSDDTVAVGIVYQF-
7	SAM-T99	1phoA	0.626	0.829	6.420	threading_7	---------------------AEIYNKDGNKLDVYGKVKAMHYMSDNASKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDV--------------KKQNGDGFGTSLTYDFGSDFAISGAYTNSDRTNEQNLQS---------RGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPIT----------GGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDI----------EGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK----LNINNDDIVAVGMTYQF
8	SPARKS	1e54a	0.126	0.778	5.491	threading_8	-----------------------------SSVTLFGIVDTNVAYVNKDAAGSGASTSRLGLRGTEDLGGGLKAGFWLEGEIFGDDGN-ASGFNFKRRSTVSLS-GNFGEVRLGRDLVPTSQKLTSYDLFSATGIGPFMGFRNWAAGQGADDNGIRANNLIPNFGGFNAGFGYAFDE-------------KQTIGTADSVGRYIGGYVAYDNG-PLSASLGLQQK---------------TAVGGLATDRDEITLGASYNFGVAKLSGLLQQTKFKRDIGG------------DIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDS---------------KAHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQVGIRHAF-
9	PROSPECT2	1osmA	0.675	0.861	3.609	threading_9	---------------------AEIYNKDGNKLDLYGKIDGLHYFSDDKDVDGDQTYMRLGVKGETQINDQLTGYGQWEYNVQANNTESSSDQAWTRLAFAGLKFGDAGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYG-SDNFLQSRANGVATYRNSDFFGLVDGLNFALQYQGKNGSVS----GEGATNNGRGALKQNGDGFGTSVTYDIFDGISAGFAYANSKRTDDQNQ---------LLLGEGDHAETYTGGLKYDANNIYLATQYTQTYNATRAGS---------LGFANKAQNFEVAAQYQFDFGLRPSVAYLQSKGKDLNG----------YGDQDILKYVDVGATYYFNKNMSTYVDYKINLLD-DNSFTRSAGISTDDVVALGLVYQF
10	PPA-I	1phoA	0.387	0.826	2.755	threading_10	---------------------AEIYNKDGNKLDVYGKVKAMHYMSDNASKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENR--------------DVKKQNGDGFGTSLTYDFGSDFAISGAYNSDRTNEQN---------LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKM----------TPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEG----------IGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK----LNINNDDIVAVGMTYQF-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.888 to 1phoA SCOP code=f.4.3.1	TM-score=0.880 to 1hxuA SCOP code=f.4.3.1	TM-score=0.859 to 1hxuA SCOP code=f.4.3.1	TM-score=0.875 to 1phoA SCOP code=f.4.3.1	TM-score=0.882 to 1phoA SCOP code=f.4.3.1