Template-based Modeling Results for YFDN_ECOLI


  Submitted Primary Sequence

>Length 164
MSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
CCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
52221022012003112201011002102202323013001302200200130213211000222330333323224323222202112212200100131032034211111002000200321223322220111122003313421212210001122246
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
1HHPRED-l2k4b_A0.1380.3961.068threading_1NVSNAELIVMRVIWSLGEARVDEIYAQIPQWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRPLME---------------------------------------------------------------------------------------------------
2HHPRED-g2jt1_A0.2460.3961.006threading_2MSESIVTKIISIVQERAPVKTRDIADAAGL-SIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWRLLE--------------------------------------------------------------------------------------------------
3HHPRED-l1p6r_A0.1620.4511.036threading_3QISDAELEVMKVIWKHSSINTNEVIKELSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDES---DYIEV--KS-------------------------------------------------------------------------------------
4HHPRED-g2k4b_A0.1540.3961.005threading_4FNVSNALIVMRVIWSLGEARVDEIYAQIPQWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRPLME---------------------------------------------------------------------------------------------------
5MUSTER3iuvA0.1090.9510.854threading_5RRQRIIDAAIRVVGQK-GLSHRTVAAE-ADVPLGSTTYHATLVAALRQANEGFAR-----VVAAHPALSDPEADLSGELARVLGEWLGGDRTGVELEYELYLAALRRPAVAAEWAEGVGALLAARTDPTTARALVAVLDGICLQVTDTPYDEEYA-VLTRLIPV
6SPARKS1bia_0.1350.9510.782threading_6MKNTVPLKLIALLANGEFHSGEQLGETL-GMSRAAINKHIQTLRDWGV---DVFTVPGKGY-SLPEPIQLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSSP---FGANLYLSMFWRLEQPAAAIGLSLVIGIVMAEVRKLGADKNDLYLQDRKLAG
7PROSPECT22imdA0.0810.9090.823threading_7IVYLANQRLSKLAQDYGLIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQ-----------LYGIPLVFPANYNSRRNIGFYYSGAEAQAAAYVNVVFNAVWGEGVSEKLGWDRSAFEHFLSSNAATERYDEQTHAAIE----RKVFGVPTFLGDEWWGS
8PPA-I1hlvA0.1300.7010.791threading_8LTFREKSRIIQEVEENPDLRKGEIARRF-NIPPSTLSTILKNKRAILASERKY-----------------------GVASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGILKEKALRIAEELGMDDSNGWLDRFRRRRS-------------------------
9HHPRED-l2g9w_A0.1280.6650.937threading_9RLGDLERAV-DHLWSRTPQTVRQVHEALSDLAYTTV-AVLQRLAKKNLVLQIR---AHRYAPVHGRDE---LVA-------------------------GL-VDALAQAEDSGSRQAALVHFVERVGADEADALRRALAE-LEA--------------------
10HHPRED-g1p6r_A0.1760.4510.821threading_10MKKDAELEVMKVIWKHSSINTNEVIKELSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDE---SDYIEV-KS--------------------------------------------------------------------------------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.538 to 1ucrB
SCOP code=a.4.5.45
TM-score=0.556 to 1lvaA
SCOP code=a.4.5.35
TM-score=0.652 to 1p6rA
SCOP code=a.4.5.39
TM-score=0.519 to 1lvaA
SCOP code=a.4.5.35
TM-score=0.760 to 2np5A
SCOP code=a.4.1.9