Template-based Modeling Results for YGBN_ECOLI


  Submitted Primary Sequence

>Length 454
MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI
4521010000000000000000101010000000000000000212022003001210110000000000000000200220100210021003201332120010000000000000000000001001000321411001000000000000000001110000001112021010110000000000000000021023222221232233232232233112422332321101100000000000000100021112322101000200111000000000000000113322213201200120021000000000001000300220200200010032020100000000000010011000000000000001001212201000000000000000110100000002210102112002011000000000000000001112
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI
1PROSPECT21jdha0.0860.9272.235threading_1DEDQVVVNKAAVMVHMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMSVLFYAITTLHNLLLHQEGAKMAVRLMVALLNKTNVKFLAITTDCLQILQESKLIILAGPQALVNIMRTYTYEKLLWTTSRVLKVL-------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM------------EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEAEGATAPLTELLHTYAAAVLFRMS
2PPA-I1pw4A0.1020.8631.210threading_2YRRLRWQIFLGIFFGYAAYYLVRK------NFALAMPYL-VEQGFS--------RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHA-----ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG------------------------------------------WDGGFMVMIGGSILAVILLIVVM
3PROSPECT21ejlI0.0990.8462.009threading_3SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES-------AWALTNIASGTSEQTKAVVDGG----AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKAIDPLLALLAVPDLSTLACGYLRNLT-----------WTLSNLCRNKNPAPPLDAVEQILPTLVRL-------------------------------------LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV-VPQLVKLLGATELPIVTPALRAIGNIV---TGTDEQTQKVIDAGALATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKIEALQRASLNLIEKYFS
4PPA-I3zuxA0.0780.6521.100threading_4---------------------------------------------------NILSKISSFIGKTFSLWAALFAAAAFFAPDTFKPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCC------PGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE---------------IQAAGM---------LMSIVKMVLLPIVLGLIVHKVL-----GSKTEKLTDAL--PLVSVAAIVLIIGAVVGAS----KGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAVPGALFSVWHNISGSLLATYWAAKA------------------------------------------------------------------
5PROSPECT21ee4a0.0670.8571.983threading_5SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA-------AWALTNIASGTSAQTKVVVDADAVPLFIQ-LLYTGSVEVKEQAIWALGNVAGDSTDY-RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ----------ALPTLAKL--------------------------------------------IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAETKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA--DKEARGLNINENADFIEKAGGMEKIFNCIYEKAYKIIETYF
6PPA-I3dh4A0.0660.9381.088threading_6ISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSV--LYLGGLALETILGIPLALFALVYSIVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSWVANLYYWGFNAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAAT--------NLPSAANADKAYPWLTQFLPVGVKGVVFAALA-----AAIVSSLASM---LNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAP------MLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKTTSKGAIIGVVASIPFALFLKFMPLSMPLYTLLFTMVVIAFTINDDDPKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVLYK----
7PROSPECT21b3ua0.1070.9691.966threading_7YDEDEVLLALAEQLYVHCLLPPLESLETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGFTSRTSACGLFSVCYPRVSSAAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL------LPLFLAQLKDECPEVRLNIISNLDCVNEV--IGIRQLSQSLLPAIVELAEWRVRLAIIEYMPLLAGQLGLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITKSLQKIGPILDNSTLQS-EVKPILEKLVKYFAQEALTVLS
8PPA-I1xm9A0.1060.8351.077threading_8SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN------QNVQQAAAGALRNLVF----RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTALMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-----HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL------------------------------------------------------------
9PROSPECT21w63A0.1100.9801.890threading_9MPAPIRLRELIRTIQAEEREMIQKECAAIRSSFVAKLLYMHMLGYPAHFGQLECLKLIAS--QKFTDKRIGYLGAMLLLDERQDHLLMTNCIKNDLNHSTQFVQGLALCTLGCM-----GSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQILYETVLTIMDIKSESVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKRAMELSFALVNGKELLYFLDSCECASGIFLAAEKYAPSKRWHIDTIMRVLTAVPNLIQLITAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQC--EEEEPIQVTEDEVLDILTRGYALTAIMKLSIKKVVSIYG
10PPA-I2jdqB0.0810.8661.069threading_10----------------------------------------------TSDMIEMIFS--KSPEQQLSATQKFRKLLIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG-----DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSD------TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQLQSLLHLLESIKKEACWTISNITAGRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEA--KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAF

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.555 to 2q6hA
SCOP code=f.54.1.1
TM-score=0.692 to 1wa5B
SCOP code=a.118.1.1
TM-score=0.857 to 1pw4A
SCOP code=f.38.1.1
TM-score=0.888 to 1kpkA
SCOP code=f.20.1.1
TM-score=0.768 to 1ialA
SCOP code=a.118.1.1