Template-based Modeling Results for YGDL_ECOLI

Submitted Primary Sequence

>Length 268
MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG
CCCCCCHHHHHHHCCEEEEECHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCEECCCCHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG
5532123212220101000013300210130100000000000100100030010000001012012100112000133202111020002103501130201001110223001200121000000000102010000100331511000000111301111010120140231100230233002211112214132102000012212223231220223222312322202102000000000000000020022012323544
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG
1	MUSTER	1jwbB	0.251	0.847	2.122	threading_1	--AELSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRC-LSRL-----FGEAGVMAPLIGVIG--SLQAMEAIKMLAGYGKPASGKREMKLMRNPGCEVC-G-----------------------------
2	SPARKS	1jw9b	0.251	0.847	3.516	threading_2	--AELSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLS------RLFGEAGVMAPLIGVIG--SLQAMEAIKMLAGYGKPASGKIVMYDAMTCGCEVCG------------------------------
3	PROSPECT2	1zfnA	0.223	0.802	3.028	threading_3	M----NDRDFMRYSRQILLIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV-ARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCL------------------------------------------------WPDNQEPERNCRTAGVVGPVVGVMGTLQALEAIKLLSGIETPAG
4	PPA-I	1zkmA	0.221	0.862	3.813	threading_4	----MNDRDFMRYSRQILLIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV-ARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEPERCRTAGVVGPVVGVMG--TLQALEAIKLLSGIETPAGGKSSLALRRASGCPVCG------------------------------
5	HHPRED-l	1zud_1	0.232	0.757	3.621	threading_5	----MNDRDFMRYSRQILLIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKD-AVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTP---------------------------------------------PWEQGCYRCLWP--------------AGVVGPVVGVMGTLQALEAIKLLSGIETPA-
6	HHPRED-g	1jw9_B	0.250	0.776	3.161	threading_6	-AE-LSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEG-----QITVFQDGEPCY-------------------------RCLS-----------------RLFGE----------AGVMAPLIGVIGSLQAMEAIKMLAGYGKPAS
7	SP3	1jw9b	0.256	0.847	3.653	threading_7	--AELSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLS------RLFGEAGVMAPLIGVIG--SLQAMEAIKMLAGYGKPASGKIVMYDAMTCGCEVC-G-----------------------------
8	SAM-T99	1jwbB	0.233	0.784	4.447	threading_8	--AELSDQEMLRYNRQIILFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFT---------------------------------------YQDGEP----------------CYRCLSRLFGEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPAS
9	MUSTER	1zkmA	0.230	0.858	2.089	threading_9	----MNDRDFMRYSRQILLIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVA-RADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDN-PERNCRTAGVVGPVVGVMG--TLQALEAIKLLSGIETPASSQRSLALRRASGCPVC-G-----------------------------
10	SPARKS	1y8qa	0.186	0.981	2.918	threading_10	---GISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDI-EKKPESFF-TQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYNLGEHEFVEEKTETTVFCPVKEALEVDWSSEKALKRTTSDYFLLQVLFRTDKGRDPSSDTYEEDSDSLGISPDLLPVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHN

Predicted Tertiary Structure


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TM-score=0.887 to 1jwbB SCOP code=c.111.1.1	TM-score=0.861 to 1jwbB SCOP code=c.111.1.1	TM-score=0.859 to 1jwbB SCOP code=c.111.1.1	TM-score=0.795 to 1jwbB SCOP code=c.111.1.1	TM-score=0.846 to 1jwbB SCOP code=c.111.1.1