Template-based Modeling Results for YGFM_ECOLI

Submitted Primary Sequence

>Length 259
MIEQFFRPDSVEQALELKRRYQDEAVWFAGGSKLNATPTRTDKKIAISLQDLELDWVDWDNGALRIGAMSRLQPLRDARFIPAALREALGFVYSRHVRNQSTIGGEIAARQEESVLLPVLLALDAELVFGNGETLSIEDYLACPCDRLLTEIIIKDPYRTCATRKISRSQAGLTVVTAAVAMTDHDGMRIALDGVASKALRLHDVEKQNLEGNALEQAVANAIFPQEDLRGSVAYKRYITGVLVADLYADCQQAGEEAV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIEQFFRPDSVEQALELKRRYQDEAVWFAGGSKLNATPTRTDKKIAISLQDLELDWVDWDNGALRIGAMSRLQPLRDARFIPAALREALGFVYSRHVRNQSTIGGEIAARQEESVLLPVLLALDAELVFGNGETLSIEDYLACPCDRLLTEIIIKDPYRTCATRKISRSQAGLTVVTAAVAMTDHDGMRIALDGVASKALRLHDVEKQNLEGNALEQAVANAIFPQEDLRGSVAYKRYITGVLVADLYADCQQAGEEAV
CCCCEECCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCEEEECCCCCCCEEEECCCEEEEECCCCHHHHHHCCCCCHHHHHHHHHHCCHHHEEEEEECCEEECCCCCHHHHHHHHHCCCEEEECCCEEEEHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEEEEEECCCEEEEEECCCCCEEEHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIEQFFRPDSVEQALELKRRYQDEAVWFAGGSKLNATPTRTDKKIAISLQDLELDWVDWDNGALRIGAMSRLQPLRDARFIPAALREALGFVYSRHVRNQSTIGGEIAARQEESVLLPVLLALDAELVFGNGETLSIEDYLACPCDRLLTEIIIKDPYRTCATRKISRSQAGLTVVTAAVAMTDHDGMRIALDGVASKALRLHDVEKQNLEGNALEQAVANAIFPQEDLRGSVAYKRYITGVLVADLYADCQQAGEEAV
5321021132031003014413330000010020001113222200000320202202223110100010202102213201200120001011320101000010000211100000000002020101312202022012032220001010332242000120222321000000000021231000001001120010310132214231032001210213222300120111000100120012013203324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIEQFFRPDSVEQALELKRRYQDEAVWFAGGSKLNATPTRTDKKIAISLQDLELDWVDWDNGALRIGAMSRLQPLRDARFIPAALREALGFVYSRHVRNQSTIGGEIAARQEESVLLPVLLALDAELVFGNGETLSIEDYLACPCDRLLTEIIIKDPYRTCATRKISRSQAGLTVVTAAVAMTDHDGMRIALDGVASKALRLHDVEKQNLEGNALEQAVANAIFPQEDLRGSVAYKRYITGVLVADLYADCQQAGEEAV
1	MUSTER	1t3qC	0.207	0.988	2.935	threading_1	MKFSYRAPASLQEVIQVLADDPD-ARIIAGGQSLLPLLAFRLPSCLVDLRNVELFEISQSAGILSVGAMVTHFRNKTDPTCVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIAGVRSVSATDFMDLEAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGARIALGAVEERAHQAIRANDFLVGKVIDESTAATALEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY--
2	SPARKS	1qj2c	0.236	0.981	5.743	threading_2	MIPDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLPEHLVDLRDIDLVGIREEGTDVVIGAMTTQHALIGSDFLLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGARIVAARDYYQGAPGELLTAIRIPVPPTGYAYEKLKRKIGDYATAAAAVVLTMSGGASIGLTNVANTPLWAEEAGKVLVGTALAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKAR-----
3	PROSPECT2	1t3qC	0.195	0.988	4.582	threading_3	MKFSYRAPASLQEVIQVLADDPD-ARIIAGGQSLLLAFRLVYPSCLVDLRNVELFEISQSAGILSVGAMVTHFRNKTDPTVAPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSRSVSATDFMDLEAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGARIALGAVEERAHQAIRANDFLVGKVIAAELATEGLEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY--
4	PPA-I	1t3qC	0.207	0.988	5.503	threading_4	MKFPYRAPASLQEVIQVLADDPD-ARIIAGGQSLLPLLRLVYPSCLVDLRNVELFEISQSAGILSVGAMVTHFRNKTDPTVVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSRSVSATDFMDLEAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGARIALGAVEERAHQAIRANDFLVGKVIDESTAATAAEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY--
5	HHPRED-l	1t3q_C	0.191	0.988	5.228	threading_5	FPASYRAPASLQEVIQVLADDP-DARIIAGGQSLLLAFRLVYPSCLVDLRNVELFEISQSAGILSVGAMVTHFRNKTDPTVAPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIAGVRSVSATDFMKGEAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGARIALGAVEERAHQAIRANDFLVGKVIDESTATEGLEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY--
6	HHPRED-g	1t3q_C	0.195	0.988	4.435	threading_6	MKFSYRAPASLQEVIQVLADDP-DARIIAGGQSLLLAFRLVYPSCLVDLRNVELFEISQSAGILSVGAMVTHFRNKTDPTVVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIAGVRSVSATDFMDLEAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGARIALGAVEERAHQAIRANDFLVGKVIDESTATEGLEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY--
7	SP3	1t3qc	0.207	0.988	5.510	threading_7	MKFSYRAPASLQEVIQVLADDPD-ARIIAGGQSLLPLLAFRLPSCLVDLRNVELFEISQSAGILSVGAMVTHFRNKTDPTCVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSRSVSATDFMKGHAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGARIALGAVEERAHQAIRANDFLVGKVIDESTAATAAEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY--
8	SAM-T99	1ffuC	0.254	0.988	4.553	threading_8	PRFEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRFPEHLIDINRIELRGIREEGSTVVIGAMTVENDLISSPIVLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPGNDHPALSIAVEAHFVLEGRRTVPADGFFLGTENEVMVEIRVPAFGTGWAYEKLKRKTGDWATAGCAVVMRKSGGIRIALTNVAPTALRAEAAEAALLGKAFTKDAAIAICEPAEDLRGDADYKTAMAGQMVKRALNAAWARCA---
9	MUSTER	1ffuC	0.266	0.988	2.934	threading_9	MIPEYHAPKSVGEAVALLGQLGSDAKLLAGGHSLLPMMKLRQPEHLIDINRIELRGIREEGSTVVIGAMTVENDLISSPIRLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPGNDHPALSIAVEAHFVLEGRRTVPADGFFLLEENEVMVEIRVPAFAAGWAYEKLKRKTGDWATAGCAVVMRKSGGIRIALTNVAPTALRAEAAEAALLGKAAAADAAIAICEPAEDLRGDADYKTAMAGQMVKRALNAAWARCA---
10	SPARKS	1t3qc	0.207	0.988	5.712	threading_10	MKFSYRAPASLQEVIQVLADDPD-ARIIAGGQSLLPLLAFRYPSCLVDLRNVELFEISQSAGILSVGAMVTHFRNKTDPTVVPILPKVLAHVAHQAVRNRGTLGGSLAHADAGAEMPFLMATLGATMYIAGVRSVSATDFMKGHAGEVLVRVEIPIPALHWEFDEYARRKGDYALVMAAAGLSMQGGARIALGAVEERAHQAIRANDFLVGKVIDESTAATAAEPRSDIHGSRDLRLSLAKAITQRVILKAAQGAMY--

Predicted Tertiary Structure


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TM-score=0.913 to 1t3qC SCOP code=d.87.2.1	TM-score=0.910 to 1t3qC SCOP code=d.87.2.1	TM-score=0.859 to 1zxiC SCOP code=d.87.2.1	TM-score=0.919 to 1t3qC SCOP code=d.87.2.1	TM-score=0.904 to 1t3qC SCOP code=d.87.2.1