Template-based Modeling Results for YGGS_ECOLI


  Submitted Primary Sequence

>Length 234
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHCCCCEEEECCCEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
343013002201310120033032223201000002232120002003011220022102201310320341122101000002121210120042010000011220022012103333220100010102333132222121012002001303202010000011142212200200220020011133312302100110232030002110100100000113332349
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK
1MUSTER1w8gA1.0000.9663.286threading_1--DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGA------
2SPARKS3r79a0.3730.9406.216threading_2--EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEK-TSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLC-IPPAEENPGPHFALLAKLAGQ----------CGLEKLSGSGDFETAVEFGATSVRVGSAIFGSRAENLY
3PROSPECT23r79A0.3680.9404.408threading_3--EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEK-TSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLCIPPAEENP----GPHFALLAKLAGQC-------GLEKLSGSGDFETAVEFGATSVRVGSAIFGSRAEQSH
4PPA-I1w8gA1.0000.9663.957threading_4--DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGA------
5HHPRED-l3sy1_A0.9470.9703.626threading_5MNDIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFAGPLQSNKSRLVAEHFDWCITIDRLRIATRLNDQRPA-ELPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLALGQSDDMEAAIAAGSTMVAIGTAIFGA------
6HHPRED-g1ct5_A0.3740.8806.095threading_6KTQLIAQYESVREVVNAEAKN------KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLP----DDIKWHFIGGLQTNKCKDLAKVPYSVETIDSLKKAKKLNESRAKFQPPILCNVQINTSHEDQKSGLNNEEIFEVIDFFEECKYIKLNGL-TIGSWN-------RDFATLVEWKKKIDAKFGTSLKLS---SADFREAIRQGTAEVRIGTDIFG-------
7SP33r79a0.3680.9406.131threading_7--EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEK-TSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLCIPPAEENP----GPHFALLAKLAGQ-------CGLEKLSGSGDFETAVEFGATSVRVGSAIFGSRAENLY
8SAM-T991w8gA1.0000.9667.392threading_8--DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGA------
9MUSTER3r79A0.3680.9403.243threading_9--EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEK-TSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLCIPPAEEN----PGPHFALLAKLAGQCG-------LEKLSGSGDFETAVEFGATSVRVGSAIFGSRAENLY
10SPARKS1w8ga1.0000.9666.102threading_10--DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGA------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.857 to 1b54A
TM-score=0.999 to native
SCOP code=c.1.6.2
TM-score=0.857 to 1b54A
TM-score=0.999 to native
SCOP code=c.1.6.2
TM-score=0.835 to 1b54A
TM-score=0.894 to native
SCOP code=c.1.6.2
TM-score=0.837 to 1b54A
TM-score=0.896 to native
SCOP code=c.1.6.2
TM-score=0.857 to 1b54A
TM-score=0.999 to native
SCOP code=c.1.6.2

  Experimental Structure

Download 1w8gA
SCOP code=c.1.6.2