Template-based Modeling Results for YGJV_ECOLI


  Submitted Primary Sequence

>Length 183
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
340110010000000000000001211310100000000000000000100000000001001000012121110000000000000002021002000000100000000013112010000000000000000000000000100000000010020121223113213233222223485
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
1SPARKS2gena0.0650.8361.001threading_1IE---IRDRSG-----ASIGSLYHKERIHGELYLAGIGQYAALLEAGFARARSAEETVRLLVTSYIDWVVANPDWARFILSRGRVEAGELGERLRADNQAHFARIHAAAGYRAEGLDCFASVVIGPAHDLARQWLAGRTRVALADC--RELLAQVAWDSVRAA--------------------
2PROSPECT21pw4A20.1010.9181.127threading_2PNKLLWYIAIANVFVYLLRYGIKHFALDKSSWAYFLYEYAGIPGTLLCNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF--------LIYGPVMLIGLHALELAPKKAAGTAAFTGLFGYLGGSVAASAIVGYTVDIGGSILAVILLIVVMIGEKRRHEQLLQELVP-------
3HHPRED-g2i68_A0.1600.4101.172threading_3---YI-----------------------------------------------YLGGAILAEVIGTTLM--------------------------------VGTIICYCASFWLLAQTLA----IAYAIWSGVGIVLISLLSWG-AIIGMMLICAGVLIINLL---------------------
4PROSPECT21r2fA0.0821.0001.117threading_4ISQQLTIRVFTGLTLLDTIQNMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESSGFWLPMYFSSRGKLTNTAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMEIRYTEALYAETGWVNDYEALFPPEMAD
5PROSPECT21t33A0.0790.8961.097threading_5MNEQAKSQLIAAALAQFGYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISRAYQLVHEQVIDPLHTHLTRLVA--AYTGCDANDTRMILHTHALLGEVLAFRLGKETILLRKAELIYQTVTCHIDLILHGLTQ-----------------
6PROSPECT22of3A0.0880.9891.083threading_6AEISQLQTLLGHLAALDSLVRLADTSPRSLLSNSDL--LLKWCTLRFFETNPAALIKVLELCKVIVELIRMSQEEVSAFVPYLLLKVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNALKSLSVEKTVAPFVVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLGV
7PROSPECT23a0oA30.0871.0001.083threading_7GQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDEAGFRVVVALAWGYDWLYERRTVRSVLLERTREVADHVPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGMTGMAYLIEAANLIRSYIGDLPGLKLGYNVRQFAHYQWYFDHIKADATGTEMAFPQVEAVSPADLP
8MUSTER1pw4A20.1430.9560.845threading_8IAIANVFVYLLRYGILDWSPTYLKEALDKSSWAYFLYEYAGIPGTLLCGGATGVFFMTLVTIATIVYWMNGNPTVDMICMIVIGFLIYGPVMLIGLHALELAKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP-------
9SPARKS3crja0.0520.8420.910threading_9LTIQRIADEYGK---STAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDVETTDPEARLNLLLDELLVKPQENPDLSVALLERSQAPYKEAFSDRFRQNDEYVRLKAVINHGIDEGVEHVTRSLLTIIDGARTRAVLDD-TEELETARQTASEYADALQ-------------------------
10PROSPECT23kb9A0.0661.0001.056threading_10MPADKVEEYADGLCYTDLMAGYYLGPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPGDHTLVAGFADSVRRLWNARFARHFHTVIEAYDREFHNRTRGIELRRLTFAHWIWTDLLEPSSGCAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHSWDDRSTPPYVNN

  Predicted Tertiary Structure

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TM-score=0.744 to 2genA
SCOP code=a.4.1.9
TM-score=0.782 to 1pw4A
SCOP code=f.38.1.1
TM-score=0.376 to 1mw7A
SCOP code=e.39.1.1
TM-score=0.577 to 2oc5A
SCOP code=a.25.1.6
TM-score=0.791 to 1t33A
SCOP code=a.4.1.9