Template-based Modeling Results for YHBW_ECOLI

Submitted Primary Sequence

>Length 335
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
55333110000000102422113200210010021034220200000100102110000000000000220120000000000211000100110000120030101000011112232001113221211122012101200211324223220101113233020000001220020013211100001111131012002101210341332332200000000012234102200210120012122122131112221123212221120012112100011222013002200420301100000210223111200200120033125
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
1	MUSTER	3fgcA	0.176	0.985	2.473	threading_1	-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICRGLYDKDFRVFGTDMDNSRAMDCWYDLMKEGFNEGHIKFPKIQLNPSAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYVTKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNKGQWRRIDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFEAGSEEEIIASMKLFQSDVPYLKE
2	SPARKS	2wgka	0.176	0.985	4.665	threading_2	----AMETGLIFHPYMRPGRSARQTFDWGIKSAVQADSVGIDSMMISEHASQIWENIPNPELLIAAAALQTKNIKFAPMAHLLPHQHPAKLATMIGWLSQILEGRYFLGIGAGAYPQASYMHGIRNETKNLNDMVRESLFIMEKIWKREPQHKLADFSPWGGKAPEIAVTGFSYPSMRLAGERNFKPV-SIFSGLDALKRHWEVYSEAAIEAGHPDRSRHAVSHTVFCADTDKEAKRLVMEGPIGYCFERYLIPRFGMMDGYAKDAGIDPVDADLEFLVDNVFLVGSPDTVTEKINALFEATGGWGTLQVDYYDDPAPWFQSLELISEVAPKILL
3	PROSPECT2	2wgkA	0.170	0.985	3.660	threading_3	----AMETGLIFHPYMRPGRSARQTFDWGIKSAVQADSVGIDSMMISEHASQIWENIPNPELLIAAAALQTKNIKFAPMAHLLPHQHPAKLATMIGWLSQILEGRYFLGIGAGAYPQASYMHGIRNAGQSLNDMVRESLFIMEKIWLEDEQHKLADFSPWGGKAPEIAVTGFSYPSMRLAGERNFKP-VSIFSGLDALKRHWEVYSEAAIEAGHPDRSRHAVSHTVFCADTDKEAKRLVMEGPIGYCFERYLWRRFGMMDGYAKDAGIDPVDADLEFLVDNVFLVGSPDTVTEKINALFEATGGWGTLQVDYYDDPAPWFQSLELISKEVAPKIL
4	PPA-I	3fgcA	0.176	0.985	3.130	threading_4	-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICRGLYDKDFRVFGTDMDNRALMDCWYDLMKEGFNEEHIKFPKIQLNPSAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYVTKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVDDSDQTKGYDFNKGQWRDFVLKRRIDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFEAGSEEEIIASMKLFQSDVMPYLK
5	HHPRED-l	1luc_A	0.177	0.925	4.166	threading_5	-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICRGL--YDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYIAADLNPSAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYDVKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVNATKIF-----------------RIDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFENGSEEEIIASMKLFQSDVMPYL-
6	HHPRED-g	2wgk_A	0.170	0.967	3.561	threading_6	-A---METGLIFHPYMRPGRSARQTFDWGIKSAVQADSVGIDSMMISEHASQIWENIPNPELLIAAAALQTKNIKFAPMAHLLPHQHPAKLATMIGWLSQILEGRYFLGIGA--GAYPQASYMHGIRTKNLNDMVRESLFIMEKIWKREPEGKDAGYSPWGGKAPEIAVTGFNSPSMRLAGERNFKPVSIF-SGLDALKRHWEVYSEAAIEAGHPDRSRHAVSHTVFCADTDKEAKRLVMEGPRYLIPIW-RRFGMMD-GYAKDAGIDVDADLEFLVD--NVFLVGSPDTVTEKINALFEATGWGTLQVEAYYDDPAPWFQSLELISKVAPKILL
7	SP3	2wgka	0.176	0.985	4.490	threading_7	----AMETGLIFHPYMRPGRSARQTFDWGIKSAVQADSVGIDSMMISEHASQIWENIPNPELLIAAAALQTKNIKFAPMAHLLPHQHPAKLATMIGWLSQILEGRYFLGIGAGAYPQASYMHGIRNAGKNLNDMVRESLFIMEKIWKREPQHKLADFSPWGGKAPEIAVTGFSYPSMRLAGERNFKPV-SIFSGLDALKRHWEVYSEAAIEAGHPDRSRHAVSHTVFCADTDKEAKRLVMEGPIGYCFERYLIPRFGMMDGYAKDAGIDPVDADLEFLVDNVFLVGSPDTVTEKINALFEATGGWGTLQVDYYDDPAPWFQSLELISEVAPKILL
8	SAM-T99	3fgcA	0.182	0.952	3.674	threading_8	-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICRGFGTDMDNSRALMDCWYDLMKGFNE------GYIAAHIKFPKIQLNPSAYTQGPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVAEHGYDVTKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNFVLKRRIDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFEANGSEEEIIASMKLFQSD-----
9	MUSTER	3fgcD	0.157	0.931	2.268	threading_9	-----MKFGLFFLNFMNSKRSSDQVIEEMLDTAHYVDQLKFDTLAVYENHFSNNGVVGAPLTVAGFLLGMTKNAKVASLNHVITTHHPVRVAEEACLLDQMSEGRFAFGFSDCEK--SADMRFFNRPTDSQFQLFSECHKIINDAFTTSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLGLPLVFRWDDSNAQRKEYAGLYHEVAQAHGVVSQVRHKLTLLVNQNVDGEAARAEARVYLEEFVRESYSNT----------------DFEQKMGELLSENAIGTYEESTQAARVAIECCGAADLLMSFEMEDKAQQRAVIDVVNANIVKYHS
10	SPARKS	1luca	0.186	0.928	4.195	threading_10	-----MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPTAHPVRQAEDVNLLDQMSKGRFRFGICR--GLYDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYPKIQLNPSAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYVTKIDHCLSYITSVDHDSNRAKDICRNFLGHWYDSYVNATKIFR-----------------IDYSYEINPVGTPEECIAIIQQDIDATGIDNICCGFENGSEEEIIASMKLFQSVMPYLKE

Predicted Tertiary Structure


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TM-score=0.786 to 1rhcA SCOP code=c.1.16.3	TM-score=0.796 to 1rhcA SCOP code=c.1.16.3	TM-score=0.768 to 1f07A SCOP code=c.1.16.3	TM-score=0.764 to 1f07A SCOP code=c.1.16.3	TM-score=0.788 to 1rhcA SCOP code=c.1.16.3