Template-based Modeling Results for YJCF_ECOLI

Submitted Primary Sequence

>Length 430
MRYNGLNNMFFPLCLINDNHSVTSPSHTKKTKSDNYSKHHKNTLIDNKALSLFKMDDHEKVIGLIQKMKRIYDSLPSGKITKETDRKIHKYFIDIASHANNKCDDRITRRVYLNKDKEVSIKVVYFINNVTVHNNTIEIPQTVNGGYDFSHLSLKGIVIKDEDLSNSNFAGCRLQNAIFQDCNMYKTNFNFAIMEKILFDNCILDDSNFAQIKMTDGTLNSCSAMHVQFYNATMNRANIKNTFLDYSNFYMAYMAEVNLYKVIAPYINLFRADLSFSKLDLINFEHADLSRVNLNKATLQNINLIDSKLFFTRLTNTFLEMVICTDSNMANVNFNNANLSNCHFNCSVLTKAWMFNIRLYRVNFDEASVQGMGITILRGEENISINSDILVTLQKFFEEDCATHTGMSQTEDNLHAVAMKITADIMQDAD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRYNGLNNMFFPLCLINDNHSVTSPSHTKKTKSDNYSKHHKNTLIDNKALSLFKMDDHEKVIGLIQKMKRIYDSLPSGKITKETDRKIHKYFIDIASHANNKCDDRITRRVYLNKDKEVSIKVVYFINNVTVHNNTIEIPQTVNGGYDFSHLSLKGIVIKDEDLSNSNFAGCRLQNAIFQDCNMYKTNFNFAIMEKILFDNCILDDSNFAQIKMTDGTLNSCSAMHVQFYNATMNRANIKNTFLDYSNFYMAYMAEVNLYKVIAPYINLFRADLSFSKLDLINFEHADLSRVNLNKATLQNINLIDSKLFFTRLTNTFLEMVICTDSNMANVNFNNANLSNCHFNCSVLTKAWMFNIRLYRVNFDEASVQGMGITILRGEENISINSDILVTLQKFFEEDCATHTGMSQTEDNLHAVAMKITADIMQDAD
CCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEECCCCCCCCCCCCCEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRYNGLNNMFFPLCLINDNHSVTSPSHTKKTKSDNYSKHHKNTLIDNKALSLFKMDDHEKVIGLIQKMKRIYDSLPSGKITKETDRKIHKYFIDIASHANNKCDDRITRRVYLNKDKEVSIKVVYFINNVTVHNNTIEIPQTVNGGYDFSHLSLKGIVIKDEDLSNSNFAGCRLQNAIFQDCNMYKTNFNFAIMEKILFDNCILDDSNFAQIKMTDGTLNSCSAMHVQFYNATMNRANIKNTFLDYSNFYMAYMAEVNLYKVIAPYINLFRADLSFSKLDLINFEHADLSRVNLNKATLQNINLIDSKLFFTRLTNTFLEMVICTDSNMANVNFNNANLSNCHFNCSVLTKAWMFNIRLYRVNFDEASVQGMGITILRGEENISINSDILVTLQKFFEEDCATHTGMSQTEDNLHAVAMKITADIMQDAD
5533222211000000013220322211211223222331321102120021031321330100011023012212214223322231221002001213331322011211132223000200110211202022020220111101013010210102211021010110303201031020230202101033010320103102012030220202101022020220102302032010220202202022010240102202023020120303202033020130202301031000220301203022010310102202011020220202102021010230102202013020320002100022030320001202012000211222102121021211203101030112113325
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRYNGLNNMFFPLCLINDNHSVTSPSHTKKTKSDNYSKHHKNTLIDNKALSLFKMDDHEKVIGLIQKMKRIYDSLPSGKITKETDRKIHKYFIDIASHANNKCDDRITRRVYLNKDKEVSIKVVYFINNVTVHNNTIEIPQTVNGGYDFSHLSLKGIVIKDEDLSNSNFAGCRLQNAIFQDCNMYKTNFNFAIMEKILFDNCILDDSNFAQIKMTDGTLNSCSAMHVQFYNATMNRANIKNTFLDYSNFYMAYMAEVNLYKVIAPYINLFRADLSFSKLDLINFEHADLSRVNLNKATLQNINLIDSKLFFTRLTNTFLEMVICTDSNMANVNFNNANLSNCHFNCSVLTKAWMFNIRLYRVNFDEASVQGMGITILRGEENISINSDILVTLQKFFEEDCATHTGMSQTEDNLHAVAMKITADIMQDAD
1	MUSTER	3du1X	0.161	0.549	2.427	threading_1	------------------------------------------------------------------------------------------------------------------------------------HMNGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWG--NLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIH------------------------------------------------------------
2	SPARKS	2xtwa	0.104	0.493	3.932	threading_2	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHM-ALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLL---MERL-GI-----------------------
3	PROSPECT2	3du1X	0.165	0.551	5.289	threading_3	HM----------------------------------------------------------------------------------------------------------------------------------------NVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNL--AADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSI-------------------------------------------------------H
4	PPA-I	3du1X	0.152	0.551	5.405	threading_4	-------------------------------------------------------------------------------------------------------------------HMNV-GEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGN--LAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIH---------------------------------------------------------------------------
5	HHPRED-l	3du1_X	0.167	0.544	3.899	threading_5	-----------------------------------------------------------------------------------------------------------------------------------HMNVGEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQ----------RTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIH-------------------------------------------------------
6	HHPRED-g	3du1_X	0.139	0.551	3.224	threading_6	----------------------------------------------------------------------------------------------------HMNVGEILRHY-AAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANF---------------GRTIQWGN--LAADLSGASLQGADLSYANLES-----AILRKANLQGADLTGAILKDAELKGAIMPDGSIH----------------------------------------------------------------------
7	SP3	2xtwa	0.113	0.495	3.890	threading_7	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHM-ALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDR---------ESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLL---MERL-GI-----------------------
8	SAM-T99	3du1X	0.173	0.523	4.427	threading_8	----------------------------------------------------------------------------------------------------------------------------------GEILRHYAAGKRNFQHINLQEIELTNA---------------------------------------------SLTGADLSYADLRQT-------------------------RLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREA-----DLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIH
9	MUSTER	2xtwA	0.151	0.493	1.991	threading_9	----------------------------------------------------------------------------------------------------------------------------------GSHM-ALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLL-MERLGI--------------------------------------------------------------------------------------
10	SPARKS	3pssa	0.094	0.493	3.809	threading_10	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIDCFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFAN-QITVSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQIN-EDQQQALLEQIGLIVFP----------------------

Predicted Tertiary Structure


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TM-score=0.682 to 2j8kA SCOP code=b.80.8.1	TM-score=0.674 to 2j8kA SCOP code=b.80.8.1	TM-score=0.650 to 2bm5A SCOP code=b.80.8.1	TM-score=0.673 to 2j8kA SCOP code=b.80.8.1	TM-score=0.684 to 2j8kA SCOP code=b.80.8.1