Template-based Modeling Results for YJIT_ECOLI

Submitted Primary Sequence

>Length 521
MLWGFVFVSFISKELALGQSEYISWVKCTSWLSNFVNLRGLRQPDGRPLYEYHATNDEYTQLTQLLRAVGQSQSNICNRDFAACFVLFCSEWYRRDYERQCGWTWDPIYKKIGISFTATELGTIVPKGMEDYWLRPIRFYESERRNFLGTLFSEGGLPFRLLKESDSRFLAVFSRILGQYEQAKQSGFSALSLARAVIEKSALPTVFSEDTSVELISHMADNLNSLVLTHNLINHKEPVQQLEKVHPTWRSEFPIPLDDETGTHFLNGLLCAASVEAKPRLQKNKSTRCQFYWSEKHPDELRVIVSLPDEVSFPVTSEPSTTRFELAICEDGEEVSGLGPAYASLENRQATVRLRKSEVRFGRQNPSAGLSLVARAGGMIVGSIKLDDSEIAIGEVPLTFIVDADQWLLQGQASCSVRSSDVLIVLPRDNSNVAGFDGQSRAVNVLGLKALPVKGCQDVTVTANETYRIRTGREQISIGRFALNGKRASWVCHPDETFIGVPKVISTLPDIQSIDVTRYTC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLWGFVFVSFISKELALGQSEYISWVKCTSWLSNFVNLRGLRQPDGRPLYEYHATNDEYTQLTQLLRAVGQSQSNICNRDFAACFVLFCSEWYRRDYERQCGWTWDPIYKKIGISFTATELGTIVPKGMEDYWLRPIRFYESERRNFLGTLFSEGGLPFRLLKESDSRFLAVFSRILGQYEQAKQSGFSALSLARAVIEKSALPTVFSEDTSVELISHMADNLNSLVLTHNLINHKEPVQQLEKVHPTWRSEFPIPLDDETGTHFLNGLLCAASVEAKPRLQKNKSTRCQFYWSEKHPDELRVIVSLPDEVSFPVTSEPSTTRFELAICEDGEEVSGLGPAYASLENRQATVRLRKSEVRFGRQNPSAGLSLVARAGGMIVGSIKLDDSEIAIGEVPLTFIVDADQWLLQGQASCSVRSSDVLIVLPRDNSNVAGFDGQSRAVNVLGLKALPVKGCQDVTVTANETYRIRTGREQISIGRFALNGKRASWVCHPDETFIGVPKVISTLPDIQSIDVTRYTC
CCEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEEEECCCEEECCCEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCEEEECCEEECCCCCCCEEECCCHHHHHCCCCCCEEEEECCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLWGFVFVSFISKELALGQSEYISWVKCTSWLSNFVNLRGLRQPDGRPLYEYHATNDEYTQLTQLLRAVGQSQSNICNRDFAACFVLFCSEWYRRDYERQCGWTWDPIYKKIGISFTATELGTIVPKGMEDYWLRPIRFYESERRNFLGTLFSEGGLPFRLLKESDSRFLAVFSRILGQYEQAKQSGFSALSLARAVIEKSALPTVFSEDTSVELISHMADNLNSLVLTHNLINHKEPVQQLEKVHPTWRSEFPIPLDDETGTHFLNGLLCAASVEAKPRLQKNKSTRCQFYWSEKHPDELRVIVSLPDEVSFPVTSEPSTTRFELAICEDGEEVSGLGPAYASLENRQATVRLRKSEVRFGRQNPSAGLSLVARAGGMIVGSIKLDDSEIAIGEVPLTFIVDADQWLLQGQASCSVRSSDVLIVLPRDNSNVAGFDGQSRAVNVLGLKALPVKGCQDVTVTANETYRIRTGREQISIGRFALNGKRASWVCHPDETFIGVPKVISTLPDIQSIDVTRYTC
43100000210031001112210101200100020011221431312100101013310220020032023222220241000000000020022213330101010002300030122100200220022112210101223222000000122100030032231201000020001023033221101100200113120121112320020002002101100321312334201210242022022301010113100200210012012323321222222311001123223102101201330213222221121010000222320012010102133320002124131422232121100000112110000010231311123000001222210100020203142220001014321211222132300212212002020001011223320102004322222200020320212112330011103002203303212022232
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLWGFVFVSFISKELALGQSEYISWVKCTSWLSNFVNLRGLRQPDGRPLYEYHATNDEYTQLTQLLRAVGQSQSNICNRDFAACFVLFCSEWYRRDYERQCGWTWDPIYKKIGISFTATELGTIVPKGMEDYWLRPIRFYESERRNFLGTLFSEGGLPFRLLKESDSRFLAVFSRILGQYEQAKQSGFSALSLARAVIEKSALPTVFSEDTSVELISHMADNLNSLVLTHNLINHKEPVQQLEKVHPTWRSEFPIPLDDETGTHFLNGLLCAASVEAKPRLQKNKSTRCQFYWSEKHPDELRVIVSLPDEVSFPVTSEPSTTRFELAICEDGEEVSGLGPAYASLENRQATVRLRKSEVRFGRQNPSAGLSLVARAGGMIVGSIKLDDSEIAIGEVPLTFIVDADQWLLQGQASCSVRSSDVLIVLPRDNSNVAGFDGQSRAVNVLGLKALPVKGCQDVTVTANETYRIRTGREQISIGRFALNGKRASWVCHPDETFIGVPKVISTLPDIQSIDVTRYTC
1	PROSPECT2	3a0oA	0.085	0.967	1.927	threading_1	QHWCYALLSAFADAVAKDPNHCGWAEFYEKSVEPWLERPVMPEPQPYPAGRVLGRDDLLDASRKWLLATKGATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVL---------LERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGYLIEAANLIRSYIGYDLYQRPFFQNTGLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMAFYNYGWWDLNFDDLVYRHDYPQVEAVSPALAVFDDIGWATIQKDMEDPDRHLQFVFKSSPYGSLSHSHGDQNAFVLYAHGEDLAIQSGYYVAFNSQMHLKGQYAEKDKALARRAAGRIVSVEEQPGHVRIVGDATAAYQVANPLVETHFVNDSYFVIVDEVECSEPQEQWLCHTLGAPQTGRSS-------FRYNGRKAGFYGQFVYSSGGTPQISAVEGFPDIDDIHHHVCATYSLKEPKRIFSFIDDQGIYFSDVDDERFKLS-LPK
2	SP3	3eb7a	0.103	0.929	1.116	threading_2	VKTAISLVGTILGKLGVP-----LVGPIVSLYSTLIDVLWPGGKSVEALINQKIAEYARAKALAELEGL---------GNNYQLYLTALEEWQENPSS-------TRVLRDV--RNRFEILDSLFTQYMPSFRVTPLLSVYAQAANLHLLLLKDAGFSTTAINN----YYNRQMSLIAQYSD------HCVQWYRTGLDRLKGSNAKQWVEYNRFRREMTLSVLDIMTLFPMY---DMRTYPMETKAQTREVYPIGAIGAQG-SWYDSAPSFNTLESGKHYTGRSSFSASNYLKKWIGHQISSQPGSIQTQTYGTTSGSSVIATQQIGFTGFDVYKTLSTAGVLFAYTSKYYGVSKVVFDAIYPDNKYKTTFTYNPGSEGIGAQEKDSEVPETLDQPYVTFIRNPDVPVFSWTHRSADYSDKITQIPVVKASDGPKPSANEVGHYLGGDPISFNGVIRLNINSSQKYRVRIRYCSSVDFDLDVVGTTVNNGRFNKSKFASFSTPFTFNQAQDTISVRNFSS
3	PROSPECT2	1w36B1	0.098	0.921	1.690	threading_3	M-----------SDVAETLDPLRLPLQIAALYLRLLLGGSAAFPRPLTVEELLVTEAATAELRGRIRS------------------NIHELRIACLRETTDNPLYERLLEEID---DKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSIRTRFPVAMTDPQQYRIFRRIYMKARSEVHAHYTLDTNWRSA----PGMVNSVNKLFSQTDDAFMFREIPFIPVKSALRFVFKGETQPAMKMWLMEGESCGVGGEALLMNGDDARPVRASDISVLVRSLLEIPSVYLSNRDRLESDKHLVQIVTIHKPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLASVWHCSLGVAPLV----RRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD-DDIAWQTAQT
4	SP3	2qkga	0.103	0.929	1.116	threading_4	VKTAISLVGTILGKLGVP-----LVGPIVSLYSTLIDVLWPGGKSVEALINQKIAEYARAKALAELEGL---------GNNYQLYLTALEEWQENPSS-------TRVLRDV--RNRFEILDSLFTQYMPSFRVTPLLSVYAQAANLHLLLLKDAGFSTTAINN----YYNRQMSLIAQYSD------HCVQWYRTGLDRLKGSNAKQWVEYNRFRREMTLSVLDIMTLFPMY---DMRTYPMETKAQTREVYPIGAIGAQG-SWYDSAPSFNTLESGKHYTGRSSFSASNYLKKWIGHQISSQPGSIQTQTYGTTSGSSVIATQQIGFTGFDVYKTLSTAGVLFAYTSKYYGVSKVVFDAIYPDNKYKTTFTYNPGSEGIGAQEKDSEVPETLDQPYVTFIRNPDVPVFSWTHRSADYSDKITQIPVVKASDGPKPSANEVGHYLGGDPISFNGVIRLNINSSQKYRVRIRYCSSVDFDLDVVGTTVNNGRFNKSKFASFSTPFTFNQAQDTISVRNFSS
5	PROSPECT2	2h94A	0.089	0.954	1.588	threading_5	S--GVEGAAFQSQEAACISGPQQTQKVFLFIRNRTLQFEATLQQLEAPYNS---DTVLVHRVHSYLERHGLINFGIYKRIGSGVSGLAAARQLQSFGMGLGGNPMAVVSKQVNMELAEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASTAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPS-----DVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQHLTVRNGYSCVPVALAEGLDIKLN-------TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDALKQQPPAVQFVPPLPEWKTSGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLAVAGEAAGIMENISDDVIVAVPQPKETVVSRWRADPWARGSYSYVAAGSSTPGIPRLFFAGEHTIRNYPATVHLREAGRIADQFLG-------AMYT
6	SP3	1ji6a	0.120	0.956	1.088	threading_6	AVG--TGISVVGQILGVVGVPFAGA--LTSFYQSFLNT--I-WPSDADPWKAFMAQEVLKKIEEYAKSKALAELQGL-QNNFEDYVNALNSWKKTPLSLRSKRSQDRIRELF-SQAESHFRNSMPSFAVSKFEV-LFLPTYAQAANTHLLLLKDAGYSSEDV----AEFYHRQLKLTQQYTD------HCVNWYNVGLNRGSTYDAWVKFNRFRREMTLVLDLIVLFPFYDIRLYSKGVK-TELTRDIFTDPFSLNTLQEYGFLSIENSIRKQGIEFHTRLQPGYFGKDSFNYWSGNYVETRPSIGSSKTITSPFYGDKSTEPV-QKLSFDGQKVYRANTDVAAWPNGKVYLGVTKVDSQYDDQKNETSTQTYDRNNGHVSAQDSIDQLPPETTDEPECFLMQDRRGTIPFFTSVDFFDAEKITQLPKAYALSSGASII-EGPGFTGGNLLFLKAKFKVTLNSAQRYRVRIRYASTTNLRLFVQNNDFLVIYINTFDLATTNSNMGFSGDKNELIIGAESF
7	PROSPECT2	2vn4A	0.090	0.900	1.588	threading_7	SVYYYMWTSALVFKNLIDRFTETYDAGLQRRIEQYITAQSGSLADGSGLGEPKFEALRAIALIGYSKWLINNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWETLAATLGQSGSASSVAPQVLCFLQRFWVSSGGYVGRTGKDVNSVLTSIHTFDPNLGCDAGTKALSNLKVVVDSFRSIKGIPAGAAVAIGRYAEDVYYNGNPWYLATFAAAEQLYDAIYVWKKTGSITVTATSLAFFQELVPG-VTAGTYSSSSSTFTNIINAVSTYADGFLSEAAKYVPADSGTPLSALHLTWSYASFLTATARRAGIVPPSWANS---------------------SASTIPSTCSGASVVGSYSRPTATSFPPSQTPKPGVPSGTPYTPLPCATPTSVAVTFHELGQTVKVAGNAAGNWSTSAAVALDAVNYADNHP------------------LWIATVNLEAGDVVEYKYINVGQDGSVTWESDPNHTYTVPAV------------ACVTQVVKEDTWQS
8	SP3	2c9ka	0.098	0.960	1.088	threading_8	LSAYTIVVGTVLTGFGFT-TPLGLALIGFGTLIPVLFPAQDQS---NTWSDFITQTKNIKEIASTYISNANKILNRS-FNVISTYHNHLKTW-ENNPNPQNTQDIQLVHYHFQNVIPELVNSCPPNPSDCDYYNILVLSSYAQAANLHLTVLNQAVKFEAYLKNNTADYYPVLTKAIEDYTN------YCVTTYKKGLNLSNLDGNINWNTYNTYRTKMTTAVLDLVALFPNY---DVGKYPIGVQSELREIYVLNFEESPYKYYDFQYQEDSLTRRPHNFYEKAQTTPNNFFT---SHYNMFHYTLDNISQKSSVFGNHNVTDKLKSLGLATNIYIFLLNVISLDNKYLNDYNNISKMDFFITNGTRLLEKELTAGSGQIVNKNIFGLILKRREFPIKSLSIPATYKTQVYTSVDPKYTHLTTQIPKANSLGTASKVV-QGPGHTGGDLIDFKDHFKITCQHSNSYFIRIRYASNGSANTRAV--INLSIPGVAELGMALNPTFSDYTNLKYKDFQYLEF
9	PROSPECT2	3clwA	0.052	0.808	1.567	threading_9	DNFSASDAWRCAFIGKNWPQ------EKKEKIADLLFKREFDEKGALTNWRVNIG-------------AGSYENREAK-----------------EVDNSWNRTECFLSPDGKYDFTKQAGQQWFMKAARERGMNNFLFFTNSAPYFMTRSASTVSTDQDCINLQNDKFDDFARFLVKSAQHFREQGFHVNYIGQWHANSFQEGSFATKADLYRMVEELDKAIMKYLFEIDSIAKTPDDIIHSMFYKDGQYSVLSAYPATLLVDIRNRIHKELSANGHNTASEYCILEKNEEITMPASPERSINLGLYVARIIHNDLTLANASAWQWWTAVSLGEDVPIQLLPLEGSNGLSLQYDGEISTTKFFVRPGMKRIAIKPTYK-------ISDLEAATSLMISSYTDGKEVVTV-------------AINYSKENQ-----------------------VISLNCDHAQKGVYLTTIDKNLRYMGEQPLKKLQ---------------------LPARSVATIVV
10	SP3	2fuqa	0.110	0.998	1.043	threading_10	VVWKDVGVSMLREQQVPDLKNRMNDPKLKKVWADMIKMQEDWKPADIPFRFYFNQKGLTVRVELMALNYLMTKDPKV-GREAITSIIDTLETATFKPAGDISRGIGLFMVTGAIQLKPEEKTRFVKAFVRLECGYPPVKDKSIRDLLSVGIAIYDEFPEMYNLAAGRFFKEHLVARNWFYPSHNYHQFTNDLFALWILDRMGVDYSRKKPKYYTMPALLAGSYEYLNYEFLKDPNVEPHCKLFEFLSRKPDDLPLAIDAGSYTGSSGGYNSPHNKNFFKRLLIYDPKETFSSSDHTDFAANDGGQRLPGKGWIAPRDAGDFRTGKILAQGFGPDNQTPDYTYLKGDITRSFLFLNLKDAKVPASNPDFKKFWLLHSIEQIKGNQITIKRTKNGDSGMLVNTALSNITSIGGKGKDFWVFGTNYTNDPKPGTDEALERGEWRVEAAAEDYYLNVIQIADKRIDGDKVVGVQLASKTSETVDFSVVGKKFVMTDLPWQVLKDYPALSAKGDDGATEGTYRFLR

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.585 to 1n7qA SCOP code=a.102.3.2	TM-score=0.576 to 1n7qA SCOP code=a.102.3.2	TM-score=0.725 to 1ji6A SCOP code=b.18.1.3	TM-score=0.575 to 1w36E SCOP code=c.37.1.19	TM-score=0.725 to 1ji6A SCOP code=b.18.1.3