Template-based Modeling Results for YJJM_ECOLI

Submitted Primary Sequence

>Length 304
MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH
5442331122002200210142322231111210031131111101300220252111211223101133232332221222222322310120002001223032132011220041020100101200220152200202231200012013210210010120010100110031233323111021012112213332231131003002100100020031210120022002001000112223233212200210120000022212210030022002101410041032223225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH
1	HHPRED-l	2di3_A	0.181	0.743	3.149	threading_1	---SVKAHESVMDWVTEELRSGRIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQALS-----------LSV---------------------------------TLQL------------------VTNQVGHHDIYETRQLLEGWAALHSSAERGDWDVAEAL-------LEKMDDPSLPLEDFLRFDAEFHVVISKGAENPLISTLMEALRLSVADHTVARARAWRATSARLQKEHRAILAALRAGESTVAATLIKEHIEGYYEETAAAEAL------
2	MUSTER	3c7jA	0.186	0.760	1.958	threading_2	--------------------------------------SNARKSDREAFLSSVL-----------------------GNEQPPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSR-PVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLAAAASYIEQLEVE-------TDFGQIGRLNRFHLSLYAKTHNKRLRLVEEGLNEEERFLRFNLS---SGLGKLSQDDHWQLLRLAEQKAVEPCVEALQYHLNRGVQAVTQYLQS-QKAGN
3	SPARKS	2hs5a	0.171	0.674	3.756	threading_3	------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGF--DPATGDLSRVAEALDLADERYAV---EDWTGVGTADIHFHSALASLNNSNRIDELRSVWNEARLVFH---VDDAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
4	PROSPECT2	3c7jA	0.185	0.763	2.535	threading_4	SNARKSDREAFLSSVL--------GNEQPPAHLARTV-----------------------------------------------------IEEKLRNAIIDGSLPSGTALRQQELATLFGVSR-PVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLAAAASYIEQLEV-------ETDFGQIGRLNRFHLSLYAKTHNKRLRLVEEGLNEEERFLRFN---LSSGLGKLSQDDHWQLLRLAEQKAVEPCVEALQYHLNRGVQAVTQYLQSQKAGNV
5	PPA-I	2hs5A	0.171	0.674	2.564	threading_5	------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGF--DPATGDLSRVAEALDLADERYAV---EDWTGVGTADIHFHSALASLNNSNRIDELRSVWNEARLVFHVD---DAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
6	HHPRED-l	2hs5_A	0.171	0.674	3.428	threading_6	------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGFD--PATGDLSRVAEALDLADERYA---VEDWTGVGTADIHFHSALASLNNSNRIDEL-RSVWNEARLVFHV--DDAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
7	HHPRED-g	2hs5_A	0.161	0.674	3.176	threading_7	------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGFDP--ATGDLSRVAEALDLADERY---AVEDWTGVGTADIHFHSALASLNNSNRIDEL-RSVWNEARLVFHV-DD-AHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
8	SP3	2hs5a	0.166	0.674	3.701	threading_8	------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGFDPATGD--LSRVAEALDLADERYAV---EDWTGVGTADIHFHSALASLNNSNRIDELR-SVWNEARLVFHV--DDAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------
9	SAM-T99	3fmsA	0.176	0.655	4.103	threading_9	-----------------------------------------------------------------------------------VDLVRTKVYN-LLKEILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIRETIETR--IEVFCLENYFDKIGSEELLEIKGEIDDVAAS------AAREIFDDSDERLHKLFIRASGNELIISLYEKIWDRIDLVRHLNER-----YVVSNREHKELIERIISGDKEGAIEKLKEHLKNVEAETIKNL--------
10	MUSTER	2hs5A	0.172	0.671	1.933	threading_10	------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYICRRVVECAGVNGF--DPATGDLSRVAEALDLADERYAV---EDWTGVGTADIHFHSALASLNNSNRIDELRSVWNEARLVFHV----DAHRFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQILGAYR-------

Predicted Tertiary Structure


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TM-score=0.599 to 2hs5A SCOP code=a.4.5.6	TM-score=0.570 to 2hs5A SCOP code=a.4.5.6	TM-score=0.575 to 2hs5A SCOP code=a.4.5.6	TM-score=0.830 to 2hs5A SCOP code=a.4.5.6	TM-score=0.584 to 2hs5A SCOP code=a.4.5.6