Template-based Modeling Results for YKGG_ECOLI

Submitted Primary Sequence

>Length 231
MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQQRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISERLQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLPEYSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVHGPVKAVYLIIEDC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQQRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISERLQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLPEYSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVHGPVKAVYLIIEDC
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCHHHHHCCCCEECCCCCCHHHHHHHHCCCEEEEEECEEEECCCEEEEECCCCCCCHHHCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHEEECCCCCCCEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQQRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISERLQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLPEYSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVHGPVKAVYLIIEDC
432112012200410323232333233121221233322312232102001200131132201111222012001200432232100001123122020232023313101122231231012023030000001000011000000212331200100020000001022013202200210121132233110000000001121212001021140111000000242
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQQRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISERLQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLPEYSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVHGPVKAVYLIIEDC
1	MUSTER	2g40A	0.202	0.706	2.016	threading_1	---------------------------------------PLSRAEILHQFEDRILDY-GAAYTHVSAAELPGAIAKALG--NARRVIVPAGIP------APWLTVGMDVLRDEPPLS---HAELDRADAVLTGCAVAISETGTIILDHRADQGRALSLIPDFHICVVREDQIVQTVREGVEAVAASVREGRPL----TWLSGGS-----------GVHGPRRLQVIVVG--
2	SPARKS	2g40a	0.196	0.706	2.998	threading_2	---------------------------------------PLSRAEILHQFEDRILD-YGAAYTHVSAAELPGAIAKALG--NARRVIVPA-------GIPAPWLTVGMDVLRDEPPLS--HAELDRADAVLTGCAVAISETGTIILDHRADQGRRALSIPDFHICVVREDQIVQTVREGVEAVAASVREGR----PLTWLSGGS-----------GVHGPRRLQVIVVG--
3	PROSPECT2	2g40A	0.190	0.706	2.583	threading_3	---------------------------------------PLSRAEILHQFEDRILD-YGAAYTHVSAAELPGAIAKALG--NARRVIVPAGIPAPWLT---------VGMDVLRDEPPLSHAELDRADAVLTGCAVAISETGTIILDHRADQGRALSLIPDFHICVVREDQIVQTVREGVEAVAASVR----EGRPLTWLSGGS-----------GVHGPRRLQVIVVG--
4	PPA-I	2g40A	0.202	0.706	2.488	threading_4	---------------------------------------PLSRAEILHQFEDRILDY-GAAYTHVSAAELPGAIAKALG--NARRVIVPAGIPAPWLTVG------MDVLRDEPPLS---HAELDRADAVLTGCAVAISETGTIILDHRADQGRRLSLIPDFHICVVREDQIVQTVREGVEAVAASVREGRPL----TWLSGGS-----------GVHGPRRLQVIVVG--
5	HHPRED-l	2g40_A	0.190	0.706	9.904	threading_5	---------------------------------------PLSRAEILHQFEDRILDYGAAYTHVS-AAELPGAIAKALGN--ARRVIVPAGIPAP-------WLTVGMDVLRDE--PPLSHAELDRADAVLTGCAVAISETGTIILDHRADQGRALSLIPDFHICVVREDQIVQTVREGVEAVAASVR----EGRPLTWLSGGS-----------GVHGPRRLQVIVVG--
6	HHPRED-g	2g40_A	0.184	0.706	6.055	threading_6	PLSRAEILHQFEDRILDYGAAYTHVS-AA---------------------------------------ELPGAIAKALGN-ARRVIVPAGIPAPWL---TVGMDVLRDEPPL-------SHAELDRADAVLTGCAVAISETGTIILDHRADQGRRLSLIPDFHICVVREDQIVQTVREGVEAVAASVR----EGRPLTWLSGGS-----------GVHGPRRLQVIVVG--
7	SP3	2g40a	0.209	0.706	1.079	threading_7	---------------------------------------PLSRAEILHQFEDRILD-YGAAYTHVSAAELPGAIAKAL--GNARRVIVP-------AGIPAPWLTVGMDVLRDEPPLS--HAELDRADAVLTGCAVAISETGTIILDHRADQGRALSLIPDFHICVVREDQIVQTVREGVEAVAASVR----EGRPLTWLSGGS-----------GVHGPRRLQVIVVG--
8	SAM-T99	2g40A	0.201	0.688	3.528	threading_8	-----------------------------------------SRAEILHQFEDRILDYGAAYTHV-SAAELPGAIAKALG--NARRVIVPGIPAPWLTVGMDVLRDEPPLSHAE----------LDRADAVLTGCAVAISETGTIILDHRADQGRRLSLIPDFHICVVREDQIVQTVREGVEAVAASVREG----RPLTWLSG-----------GSGVHGPRRLQVIVV---
9	MUSTER	3cqmA2	0.091	0.853	0.594	threading_9	KQHLKAEKKLAEKAV--EQHTLPFKPKKGSRILIVAPYE--EQTASIEQTIHDLIKRKKISKMNFASQVFKTEHEKQVKE--ADYIITGSYVVKNDPVVNDG--VIDDTISDSSKWATVFPRAVMKA----------ALQHNKPFVLMSLRNPYDAANFEEAKALIAVYRYLQPNIPAGVMAIFGQAKPKGTLP-----VDIPSVTKPGNTLYPLG-YGPL----------
10	SPARKS	3ecsa	0.112	0.970	0.758	threading_10	KRDKQGLRANLTSAIETLCGVDSSVAVSSGGELFLRFISCKKIIERGELFLRRISLSRGATILTHAYSRVVLRVLEAAVAAKKRSVYVTESQPDLSGKKAKALCHLNVPVTV---VLDAAVGYIEKADLVIVGAE-GVVENGGIINKIGTNQAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYLKEEHPWVDYT--APSLITL-LFTDLGVLTPSAVSDELIKLY

Predicted Tertiary Structure


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TM-score=0.835 to 2g40A SCOP code=c.124.1.7	TM-score=0.839 to 2g40A SCOP code=c.124.1.7	TM-score=0.837 to 2g40A SCOP code=c.124.1.7	TM-score=0.835 to 2g40A SCOP code=c.124.1.7	TM-score=0.836 to 2g40A SCOP code=c.124.1.7