Template-based Modeling Results for YMDB_ECOLI


  Submitted Primary Sequence

>Length 177
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE
CCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE
554201002010131201000000122022110000000310022013101301342230310200002012120200000001113223331120011001100210232201000000000112102221002000200120034232221000000233002002310233245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE
1MUSTER1spvA1.0000.9663.707threading_1--TRIHVVQGDITKLAVDVIVNAANPSL-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQ---
2SPARKS3q6za0.3490.9894.357threading_2PGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKHLKEIYLVDVSEKTVEAFAEAVKTVF--
3PROSPECT23q6zA0.3490.9894.120threading_3PGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKCLKEIYLVDVSEKTVEAFAEAVKTV--F
4PPA-I1spvA1.0000.9663.709threading_4--TRIHVVQGDITKLAVDVIVNAANPSL-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQ---
5HHPRED-l1spv_A1.0000.9664.146threading_5--TRIHVVQGDITKLAVDVIVNAANPSL-GGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQ---
6HHPRED-g2x47_A0.4620.9773.546threading_6LNEKISLLRSDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTL----QSCKTGKAKITGGYRLPAKYVIHTVGPIAYGESASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDVDRLIICVFLEKDEDIYRSRLPHYFPV
7SP33q6za0.3490.9894.542threading_7PGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKCLKEIYLVDVSEKTVEAFAEAVKTVF--
8SAM-T991spvA0.9940.9665.023threading_8--TRIHVVQGDITKLAVDVIVNAANPS-LGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQ---
9MUSTER3q6zA0.3490.9893.568threading_9PGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKCLKEIYLVDVSEKTVEAFAEAVKTVF--
10SPARKS3q71a0.2510.9894.141threading_10GGLQMLLVKEGVQNAKTDVVVNSVPLDLLSRGPLSKSLLEKAGPELQEELDTVGQ-GVAVSMGTVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNKTLQEVHFLLHDHENIQAFSDEFARRAN-

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.982 to 1spvA
TM-score=0.999 to native
SCOP code=c.50.1.2
TM-score=0.922 to 1spvA
TM-score=0.937 to native
SCOP code=c.50.1.2
TM-score=0.919 to 1spvA
TM-score=0.934 to native
SCOP code=c.50.1.2
TM-score=0.919 to 1spvA
TM-score=0.934 to native
SCOP code=c.50.1.2
TM-score=0.982 to 1spvA
TM-score=0.999 to native
SCOP code=c.50.1.2

  Experimental Structure

Download 1spvA
SCOP code=c.50.1.2