Template-based Modeling Results for YNBA_ECOLI

Submitted Primary Sequence

>Length 201
MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLLTGLLLMLAAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALYLPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGLAVAIYPQWMQWNNLLWSIASILLLWTAINRCRSVLLMSAEI
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLLTGLLLMLAAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALYLPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGLAVAIYPQWMQWNNLLWSIASILLLWTAINRCRSVLLMSAEI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLLTGLLLMLAAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALYLPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGLAVAIYPQWMQWNNLLWSIASILLLWTAINRCRSVLLMSAEI
451220220022002100210142301111000000000000000000012100000000000010001000010013133313000001200100010000000000010000000000000000200000021030221220111201100000000000000110010000000000000000002102210121245
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLLTGLLLMLAAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALYLPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGLAVAIYPQWMQWNNLLWSIASILLLWTAINRCRSVLLMSAEI
1	SPARKS	3mnla	0.097	0.920	1.197	threading_1	LGSEAQRERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYFPSKVHLLVSALGREFSRIDAKTDRSAVAGATPFQRLNFMVGKLNRAMQRNPLLTEAMTRAYVFADASAASEVDQVEKLIDSMFARAMAGEPT------EDQYHIARVISDVWLSNLLAWLTRR---------ASATDVSKRLDLAVRLLQD-
2	PROSPECT2	2fbqA	0.077	0.970	1.221	threading_2	AQ----SETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELDRRQAQHATLEDLLHLLVSQAMALSIFMRLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLV--NEAAPKLPPIELFWRVHFMLGAAAFSMSGIKALRAMAETDFTEQVMHLMVPFFAAGMRESGID
3	PPA-I	3mnlA	0.090	0.935	1.001	threading_3	LGSEAQRERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYFPSKVHLLVSALGREFSRIDAKTDRSAVAGATPFQRLNFMVGKLNRAMQRNPLLTEAMTRAYVFADASAASEVDQVEKLIDSMFARAMA-----GEPTEDQYHIARVISDVWLSNLLAWLTRRASATDVSKRLDLAVRLLIGDQD--------
4	SPARKS	2gena	0.108	0.920	1.068	threading_4	--------RKDEILQAALACFSEHGVDATTIEIRDRS-GASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGFARARSAEETVRLLVTSYIDWVVNPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFREPDDCFASVVIGPAHDLARQWLAGRTRVALADCRELLAQVAWDSVRAA-------
5	PROSPECT2	1t33A	0.087	0.970	1.190	threading_5	MNITKGEQAKSQLIAAALAQFGEYGLHAT-TRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLHTHLTRLVAAYTG-----CDANDTRMILHTHALLGEVLAFRLGKETILLRTFDEEKAELIYQTVTCHIDLILHGLTQ
6	SPARKS	2hyja	0.097	0.920	1.039	threading_6	---AEAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPALAEPPGLRRLRAVCANSVGYLEEGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADL-TAAVDKGELPAVEQALFEIVAAGLALNAAMQLQHDR------------TAADRARRAIERALAQ
7	PROSPECT2	2bkuB2	0.090	1.000	1.127	threading_7	TISTFVMDKLGQTMDMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAQATKDTQKRQLSL
8	SPARKS	1pb6a	0.089	0.945	1.034	threading_8	----AVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKA-FREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVT------GATLRDEVFFNQTVENVQRI
9	PROSPECT2	2rd3A	0.062	0.955	1.103	threading_9	DPYQNAQSIWGDCISPFVQGIGRGTLERDKFRFY-----IIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQKELQNKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHASSKEFQACVNWNINLLDSLTLASSK----QEIEKLKEIFITTSEYEYLFWDMAYQS
10	SPARKS	2nx4a	0.090	0.940	1.022	threading_10	VPLVDHDERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEALGDATGLD-ALRILCREVMNEEQLLEARIAASLWPRAMYDEQMAATNRRTMDNWREQMAIFLEQAREEGSVGDIDVTIVVEQLLNMMMGMQILGVLTPGET-----------SSERQLEMLEQFVAA

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.684 to 2np5A SCOP code=a.4.1.9	TM-score=0.905 to 2fbqA SCOP code=a.4.1.9	TM-score=0.686 to 2hkuA SCOP code=a.4.1.9	TM-score=0.948 to 2genA SCOP code=a.4.1.9	TM-score=0.760 to 1t33A SCOP code=a.4.1.9