Template-based Modeling Results for YNFH_ECOLI

Submitted Primary Sequence

>Length 284
MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIVRGMFFLWLLMGVGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWLVAVIGKMPQALGKLWLLFSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLSGPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVPDYASLQVWRVVLLCAGLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHMTVGMAIAG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIVRGMFFLWLLMGVGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWLVAVIGKMPQALGKLWLLFSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLSGPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVPDYASLQVWRVVLLCAGLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHMTVGMAIAG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIVRGMFFLWLLMGVGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWLVAVIGKMPQALGKLWLLFSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLSGPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVPDYASLQVWRVVLLCAGLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHMTVGMAIAG
54211110010000000000000000000010123332222200100000000000000000010000010010012010001111000000000000000001000311300020000000000000000000012022010111000000000000000000000002113221211000000000000000000110111110120021012002100000001000000000010011133333211000000000000100000000000000011133
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIVRGMFFLWLLMGVGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWLVAVIGKMPQALGKLWLLFSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLSGPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVPDYASLQVWRVVLLCAGLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHMTVGMAIAG
1	MUSTER	3zuxA	0.107	0.951	0.956	threading_1	I-GKTFSLWAALFAAAAFFYIPWLLGIIMFGMGLTLKP--SDFDILFK----PKVVIIGVIAQFAIMPATAWCLSKLLN---LPAEIAVGVILVGCCTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEK-LTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTYDAQKALTIEVGMQN---SGLAAALAAAHFAAAVPGALFSVWHNISGSLLAT
2	SPARKS	2vpwc	0.174	0.831	1.043	threading_2	AQEFWH-WTNALHFVLVGLAGGVALLAALLHLKGDAE-------ARRYTLYALMLIALDLFILWAESPARRFTHIWLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLGKGSQ--RALAWALLVFSLVALSYPGLALAVNLNRPLWNGL--MAGLFPLTALVLALGLAALLKSPWALFPLRVLAGASLLLALLYPLTLPPEARGHLLEEAGFWYGLFLLLGLGTLAPWAGLLAAAGLRALLVLAGQWQGL------------------------------------
3	PROSPECT2	1ee4a	0.102	1.000	1.571	threading_3	LNSDDMQEQLSATVKFRQILLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLSHESTLVQTPALRAVGNIVVLPALRLLLSSPKENIKKEACWTISNIIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLENADFIEKAG
4	PPA-I	3zuxA	0.100	0.915	1.092	threading_4	------NILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLK----------PSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNV-----ALSVAVTSVSTLTSPLLTPAIFLMLAGEM---LEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEV
5	HHPRED-l	2vpz_C	0.174	0.831	5.000	threading_5	NAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAEA--RRYT---LYALMLIALDLFILWA--ESPARFFTHIWHP-TSPIWWGAWGLGLGFLTGGLLYLG---KG----SQRALAWALLVFSLVALSYPGLALANLNRPLWNGL-MAGLFPLTALVLALGLAALLK-SPWALF---PLRVL---AGASLLLALLYPLTLPPEAR-----GH-LLEEA---GFWYGLFLLLGLG----TFWQERLAP--WA---GLLAAAG---LRALLVLAGQWQGL----
6	HHPRED-g	2vpz_C	0.178	0.831	6.086	threading_6	NAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAEA--RRYT---LYALMLIALDLFILWA--ESPARFFTHIWHP-TSPIWWGAWGLGLGFLTGGLLYLG---KG----SQRALAWALLVFSLVALSYPGLALVNLNRPLWNGL-MAGLFPLTALVLALGLAALLK--SP--WALFPLRVLAGASLLL---ALLYPL-TL---P-P-EARGHLLEEAGF---WYGLFLLLGL----GTFWQERLAPWAG-----LLAAAG---LRALLVLAGQWQGL----
7	SP3	1okca	0.107	0.951	0.517	threading_7	------DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG-FLSFWRNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFA------RTRLAADVGKGAAQRELGNCITKIFK-SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGATVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG
8	SAM-T99	2y0cA	0.116	0.454	0.674	threading_8	-----------------------------------GERARELMKKLYA-----------------------------------------------------------PFNRNHERTLY-------------------------------------------------------MDVRSAEFTKYAANAMLATRISFMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALPNTDDMREAPSRELIAELLSRGARIAAYDPV------
9	MUSTER	2vpyC	0.204	0.810	0.928	threading_9	AQEFWH-WTNALHFVLVGLAGGVALLAALLHLKGDA-----EARRYTLYALMLIALDLFILWAE--SPAR-----FRFTHIWLTSPIWWGAWGLGLGFLTGGLLYLGKGSQ---RALAWALLVFSLVALSYPGLALAVNNRPLW-NGLMAGLFPLTALVLALGLAALL-----SPWALFPLRVLAGASLLLALLYPLTL---------PPEARGHLLEEAG---FWYGLFLLLGLGTFLAPWAG----LLAAAGLRALLVLAGQWQGL----------------
10	SPARKS	2hyja	0.153	0.644	0.929	threading_10	---------------------------------AEAQATRGRILGRAAEIASEEG----LDGITIGRLAEE----LEMSKSGVTKETLQISTLDKAFVDFWHVEPALAEPPGLRRLRAVCANSVGYLE---------EPLLPG-----------------GCLLTAALSEYDGRPG-------------RVRDAVAEVWSRWREQLRADLTAAVDLPAGFDVEQALFEIVAAGLALNAAMQLQHDRT------AADRARRAIERALAQS---------------

Predicted Tertiary Structure


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TM-score=0.435 to 1pv6A SCOP code=f.38.1.2	TM-score=0.486 to 1h6gA SCOP code=a.24.9.1	TM-score=0.489 to 1hrbA SCOP code=a.24.4.1	TM-score=0.613 to 1wa5B SCOP code=a.118.1.1	TM-score=0.444 to 1pw4A SCOP code=f.38.1.1