************************************************************************** * TM-align (Version 20140601) * * An algorithm for protein structure alignment and comparison * * Based on statistics: * * 0.0 < TM-score < 0.30, random structural similarity * * 0.5 < TM-score < 1.00, in about the same fold * * Reference: Y Zhang and J Skolnick, Nucl Acids Res 33, 2302-9 (2005) * * Please email your comments and suggestions to: zhng@umich.edu * ************************************************************************** Name of Chain_1: A13098 Name of Chain_2: B13098 Length of Chain_1: 154 residues Length of Chain_2: 146 residues Aligned length= 143, RMSD= 1.83, Seq_ID=n_identical/n_aligned= 0.245 TM-score= 0.81453 (if normalized by length of Chain_1) TM-score= 0.85377 (if normalized by length of Chain_2) (You should use TM-score normalized by length of the reference protein) (":" denotes aligned residue pairs of d < 5.0 A, "." denotes other aligned residues) MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRVKHLKTEAEMKASEDLKKHGVTVLTALGAILKKK--G-HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: : :::::::::::::: ::::::::::::::::::::::::: :::::::::::::::::::::: : :: -SLSAAEADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANFFADFKGKS-VADIKASPKLRDVSSRIFTRLNEFVNNAANAGKMSAMLSQFAKEHV-GFGVGSAQFENVRSMFPGFVASVAA--PPAGADAAWTKLFGLIIDALKA-A-----GA
Superposition of two proteins |
Superposition of two proteins with ligands and solvents (when available) |
Click B13098.pdb to download the second structure (structure2.pdb) that you submitted.
Click C13098.pdb to download a Rasmol script file to show the superposed Ca-traces in the aligned regions (To view the structure superposition, please run 'rasmol -script C13098').
Click D13098.pdb to download a Rasmol script file to show the superposed Ca-traces of entire chain (To view the structure superposition, please run 'rasmol -script D13098').
Click E13098.pdb to download a Rasmol script file to show the superposed full-atom structure in the aligned region (To view the structure superposition, please run 'rasmol -script E13098').
Click F13098.pdb to download a Rasmol script file to show the superposed full-atom structure of the entire chain (To view the structure superposition, please run 'rasmol -script F13098').
Click G13098.pdb to download a Rasmol script file to show the superposed full-atom structure of the entire chain with ligands/solvents (To view the structure superposition, please run 'rasmol -script G13098').
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