Hi im new on I-TASSER, your are doing a good job.
Well this is the problem and i already change "./pair" to "$tmpdir/pair" in the runI-TASSER.pl file, i replace all the ./pair on the file.
root@daniel-VirtualBox:/# /home/daniel/I-TASSER/I-TASSERmod/runI-TASSER.pl -libdir /home/daniel/I-TASSER -seqname seq.fasta -datadir /home/daniel -usrname daniel
Your setting is:
-libdir =/home/daniel/I-TASSER
-seqname =seq.fasta
-datadir =/home/daniel
-usrname =daniel
-runstyle =serial
-homoflag =real
-idcut =1
-ntemp =20
-nmodel =5
1. make seq.txt and rmsinp
2.1 run Psi-blast
2.2 run psipred
2.3 run solve
2.3 run solve
2.4 run pairmod
2.4.1 removing homology templates based on real and 1
2.4.2 running pair ................
/tmp/daniel/ITseq.fasta/pair: 5: Syntax error: "(" unexpected
/bin/cp: no se puede efectuar `stat' sobre «pair.3»: No existe el archivo o el directorio
/bin/cp: no se puede efectuar `stat' sobre «pair.1»: No existe el archivo o el directorio
3.1 do threading
start threading QQQ
./svm-predict: 1: Syntax error: "(" unexpected
./svm-predict: 1: Syntax error: "(" unexpected
./zalign: 1: Syntax error: "(" unexpected
Illegal division by zero at /home/daniel/QQQ_seq.fasta line 577.
hostname: daniel-VirtualBox
starting time: sáb mar 17 08:57:35 COT 2012
pwd: /tmp/daniel/ITseq.fasta
running Psi-blast .....
running zalign .....
./zalign 7.01 0.55 0.66 1.6 -0.99 0.31 0.19 0 1.0 0.39 0.19
start threading GGGd
./zalign: 3: Syntax error: word unexpected (expecting ")")
Illegal division by zero at /home/daniel/GGGd_seq.fasta line 355.
hostname: daniel-VirtualBox
starting time: sáb mar 17 09:14:41 COT 2012
pwd: /tmp/daniel/ITseq.fasta
running zalign .....
start threading GGGf
./zalign: 3: Syntax error: word unexpected (expecting ")")
Illegal division by zero at /home/daniel/GGGf_seq.fasta line 354.
hostname: daniel-VirtualBox
starting time: sáb mar 17 09:14:41 COT 2012
pwd: /tmp/daniel/ITseq.fasta
running zalign .....
start threading NNNd
./zalign: 1: ELF: not found
./zalign: 2: @8@@@r: not found
./zalign: 3: r: not found
./zalign: 4: x: not found
./zalign: 5: xjxj��lIN: not found
./zalign: 1: Syntax error: Unterminated quoted string
Illegal division by zero at /home/daniel/NNNd_seq.fasta line 351.
hostname: daniel-VirtualBox
starting time: sáb mar 17 09:14:41 COT 2012
pwd: /tmp/daniel/ITseq.fasta
running zalign .....
start threading SSSc
./zalign: 2: Syntax error: word unexpected (expecting ")")
Illegal division by zero at /home/daniel/SSSc_seq.fasta line 351.
hostname: daniel-VirtualBox
starting time: sáb mar 17 09:14:41 COT 2012
pwd: /tmp/daniel/ITseq.fasta
running zalign .....
only 0 threading programs have output
thanks