Hello. I'm having the following errors when running I-TASSERv4.1 over the sample the data. This is the CLI output during execution.
~/I-TASSER/I-TASSER4.1/I-TASSERmod/runI-TASSER.pl -libdir ~/I-TASSER/I-TASSER4.1/lib -seqname ab28wt -datadir ~/I-TASSER/I-TASSER4.1/tests/ab28wt -runstyle serial -homoflag benchmark -idcut 0.3 -LBS true -EC true -GO true -pkgdir ~/I-TASSER/I-TASSER4.1/ -java_home /usr -outdir ~/I-TASSER/I-TASSER4.1/tests/ab28wt_out
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
Your setting for running I-TASSER is:
-pkgdir = ~/I-TASSER/I-TASSER4.1
-libdir = ~/I-TASSER/I-TASSER4.1/lib
-java_home = /usr
-seqname = ab28wt
-datadir = ~/I-TASSER/I-TASSER4.1/tests/ab28wt
-outdir = ~/I-TASSER/I-TASSER4.1/tests/ab28wt_out
-runstyle = serial
-homoflag = benchmark
-idcut = 0.3
-ntemp = 20
-nmodel = 5
-light = false
-hours = 50
-LBS = true
-EC = true
-GO = true
1. make seq.txt and rmsinp
Your protein contains 28 residues:
> ab28wt
DAEFRHDSGYEVHHQKLVFFAEDVGSNK
2.1 run Psi-blast
2.2 Secondary structure prediction was done before.
2.3 Predict solvent accessibility...
2.4 run pairmod
2.4.1 removing homology templates based on benchmark and 0.3
2.4.2 running pair ................
FORTRAN STOP
20085 2419075 total lib str & residues
number of observations 2.630561 6187.080
pair done
3.1 do threading
~/I-TASSER/I-TASSER4.1/tests/ab28wt/init.PPAS exists
~/I-TASSER/I-TASSER4.1/tests/ab28wt/init.dPPAS exists
~/I-TASSER/I-TASSER4.1/tests/ab28wt/init.dPPAS2 exists
~/I-TASSER/I-TASSER4.1/tests/ab28wt/init.Env-PPAS exists
start serial threading MUSTER
/tmp/user/ITab28wt
~/I-TASSER/I-TASSER4.1/tests/ab28wt/MUSTER_ab28wt
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 522 of file zal33.f
Fortran runtime error: End of file
Illegal division by zero at ~/I-TASSER/I-TASSER4.1/tests/ab28wt/MUSTER_ab28wt line 599.
hostname: node1
starting time: Mon Sep 22 10:41:07 EST 2014
pwd: /tmp/user/ITab28wt
running Psi-blast .....
running zalign .....
./zalign 7.01 0.55 0.66 1.6 -0.99 0.31 0.19 0 1.0 0.39 0.19
~/I-TASSER/I-TASSER4.1/tests/ab28wt/init.wPPAS exists
~/I-TASSER/I-TASSER4.1/tests/ab28wt/init.wdPPAS exists
~/I-TASSER/I-TASSER4.1/tests/ab28wt/init.wMUSTER exists
exclude homologous templates...
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
3.2 make restraints
4.1 run simulation
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
run 14 serial simulations
run simulation job 1 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 2 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 3 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 4 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 5 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 6 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 7 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 8 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 9 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 10 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 11 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 12 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 13 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 14 / 14
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = (unset),
LC_CTYPE = "UTF-8",
LANG = "en_US.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
5.1 do clustering
No. of trajectory files: 0
cp: cannot stat `model*.pdb': No such file or directory
cp: cannot stat `cscore': No such file or directory
cp: cannot stat `lscore.txt': No such file or directory
cp: cannot stat `rst.dat': No such file or directory
cp: cannot stat `rep*tra*.*': No such file or directory
The first lines represent the command that I run. I can notice two errors in the output:
1. At line 522 of file zal33.f
Fortran runtime error: End of file
Illegal division by zero at ~/I-TASSER/I-TASSER4.1/tests/ab28wt/MUSTER_ab28wt line 599.
2. At line 1714 of file cas.f
Fortran runtime error: End of file
bzip2: Can't open input file rep*.tra: No such file or directory.
Does anybody have a solution for this? I saw posts with similar errors, but the solutions given there did not seem to apply to my current case (I tried them, but could not find the steps coherent to my set up).
Good day.