Hi
I'm wondering if it is possible to either do a batch run of 109 peptides to calculate the predicted secondary structure as given by QUARK. Although I can get part-way there using PSSPred, I'm missing the beta-turn prediction in the results. Is there a way for me to either set up QUARK on a local machine, or would it be possible to just generate these predictions for the 109 peptides?
Cheers,
Hiren