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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 96 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1w5c:A (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    2 1w5c:A (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    3 1w5c:A (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    4 1w5c:A (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 N/A
    5 1w5c:A (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    6 1w5c:A (3.2) BS06 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    7 1w5c:A (3.2) BS07 FE2 1.10.3.9 GO:0005506 ... P0A444 N/A
    8 1w5c:A (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    9 1w5c:A (3.2) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 N/A
    10 1w5c:B (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 N/A
    11 1w5c:B (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 N/A
    12 1w5c:B (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 N/A
    13 1w5c:B (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 N/A
    14 1w5c:B (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 N/A
    15 1w5c:B (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 N/A
    16 1w5c:B (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 N/A
    17 1w5c:B (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 N/A
    18 1w5c:B (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 N/A
    19 1w5c:B (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 N/A
    20 1w5c:B (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 N/A
    21 1w5c:B (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 N/A
    22 1w5c:B (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 N/A
    23 1w5c:B (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 N/A
    24 1w5c:C (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 N/A
    25 1w5c:C (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 N/A
    26 1w5c:C (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 N/A
    27 1w5c:C (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 N/A
    28 1w5c:C (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 N/A
    29 1w5c:C (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 N/A
    30 1w5c:C (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 N/A
    31 1w5c:C (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 N/A
    32 1w5c:C (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 N/A
    33 1w5c:C (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 N/A
    34 1w5c:C (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 N/A
    35 1w5c:C (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 N/A
    36 1w5c:C (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 N/A
    37 1w5c:D (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    38 1w5c:D (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    39 1w5c:D (3.2) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    40 1w5c:D (3.2) BS04 FE2 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    41 1w5c:D (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    42 1w5c:D (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    43 1w5c:D (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    44 1w5c:D (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    45 1w5c:E (3.2) BS01 HEM ? GO:0005506 ... Q8DIP0 N/A
    46 1w5c:F (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 N/A
    47 1w5c:G (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    48 1w5c:G (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    49 1w5c:G (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    50 1w5c:G (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 N/A
    51 1w5c:G (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    52 1w5c:G (3.2) BS06 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    53 1w5c:G (3.2) BS07 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    54 1w5c:G (3.2) BS08 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    55 1w5c:G (3.2) BS09 FE2 1.10.3.9 GO:0005506 ... P0A444 N/A
    56 1w5c:G (3.2) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    57 1w5c:G (3.2) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 N/A
    58 1w5c:H (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 N/A
    59 1w5c:H (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 N/A
    60 1w5c:H (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 N/A
    61 1w5c:H (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 N/A
    62 1w5c:H (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 N/A
    63 1w5c:H (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 N/A
    64 1w5c:H (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 N/A
    65 1w5c:H (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 N/A
    66 1w5c:H (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 N/A
    67 1w5c:H (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 N/A
    68 1w5c:H (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 N/A
    69 1w5c:H (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 N/A
    70 1w5c:H (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 N/A
    71 1w5c:H (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 N/A
    72 1w5c:I (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 N/A
    73 1w5c:I (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 N/A
    74 1w5c:I (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 N/A
    75 1w5c:I (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 N/A
    76 1w5c:I (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 N/A
    77 1w5c:I (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 N/A
    78 1w5c:I (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 N/A
    79 1w5c:I (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 N/A
    80 1w5c:I (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 N/A
    81 1w5c:I (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 N/A
    82 1w5c:I (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 N/A
    83 1w5c:I (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 N/A
    84 1w5c:I (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 N/A
    85 1w5c:J (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    86 1w5c:J (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    87 1w5c:J (3.2) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    88 1w5c:J (3.2) BS04 FE2 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    89 1w5c:J (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    90 1w5c:J (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    91 1w5c:J (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    92 1w5c:J (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    93 1w5c:K (3.2) BS01 HEM ? GO:0005506 ... Q8DIP0 N/A
    94 1w5c:L (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 N/A
    95 1w5c:T (3.2) BS01 HEC ? GO:0005506 ... P0A386 N/A
    96 1w5c:V (3.2) BS01 HEC ? GO:0005506 ... P0A386 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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