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BioLiP
Download all results in tab-seperated text for 124 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2axt:A (3.0) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 16355230
    2 2axt:A (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    3 2axt:A (3.0) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    4 2axt:A (3.0) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    5 2axt:A (3.0) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 16355230
    6 2axt:A (3.0) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 16355230
    7 2axt:A (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    8 2axt:A (3.0) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 16355230
    9 2axt:A (3.0) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    10 2axt:A (3.0) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 16355230
    11 2axt:A (3.0) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    12 2axt:B (3.0) BS01 CLA ? GO:0009521 ... Q8DIQ1 16355230
    13 2axt:B (3.0) BS02 CLA ? GO:0009521 ... Q8DIQ1 16355230
    14 2axt:B (3.0) BS03 CLA ? GO:0009521 ... Q8DIQ1 16355230
    15 2axt:B (3.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 16355230
    16 2axt:B (3.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 16355230
    17 2axt:B (3.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 16355230
    18 2axt:B (3.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 16355230
    19 2axt:B (3.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 16355230
    20 2axt:B (3.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 16355230
    21 2axt:B (3.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 16355230
    22 2axt:B (3.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 16355230
    23 2axt:B (3.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 16355230
    24 2axt:B (3.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 16355230
    25 2axt:B (3.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 16355230
    26 2axt:B (3.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 16355230
    27 2axt:B (3.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 16355230
    28 2axt:C (3.0) BS01 UNK ? GO:0005737 ... Q8DIF8 16355230
    29 2axt:C (3.0) BS02 CLA ? GO:0005737 ... Q8DIF8 16355230
    30 2axt:C (3.0) BS03 CLA ? GO:0005737 ... Q8DIF8 16355230
    31 2axt:C (3.0) BS04 CLA ? GO:0005737 ... Q8DIF8 16355230
    32 2axt:C (3.0) BS05 CLA ? GO:0005737 ... Q8DIF8 16355230
    33 2axt:C (3.0) BS06 CLA ? GO:0005737 ... Q8DIF8 16355230
    34 2axt:C (3.0) BS07 CLA ? GO:0005737 ... Q8DIF8 16355230
    35 2axt:C (3.0) BS08 CLA ? GO:0005737 ... Q8DIF8 16355230
    36 2axt:C (3.0) BS09 CLA ? GO:0005737 ... Q8DIF8 16355230
    37 2axt:C (3.0) BS10 CLA ? GO:0005737 ... Q8DIF8 16355230
    38 2axt:C (3.0) BS11 CLA ? GO:0005737 ... Q8DIF8 16355230
    39 2axt:C (3.0) BS12 CLA ? GO:0005737 ... Q8DIF8 16355230
    40 2axt:C (3.0) BS13 CLA ? GO:0005737 ... Q8DIF8 16355230
    41 2axt:C (3.0) BS14 CLA ? GO:0005737 ... Q8DIF8 16355230
    42 2axt:D (3.0) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    43 2axt:D (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    44 2axt:D (3.0) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    45 2axt:D (3.0) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    46 2axt:D (3.0) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    47 2axt:D (3.0) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    48 2axt:D (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    49 2axt:D (3.0) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    50 2axt:E (3.0) BS01 HEM ? GO:0005506 ... Q8DIP0 16355230
    51 2axt:F (3.0) BS01 HEM ? GO:0005506 ... Q8DIN9 16355230
    52 2axt:H (3.0) BS01 CLA ? GO:0009523 ... Q8DJ43 16355230
    53 2axt:H (3.0) BS02 CLA ? GO:0009523 ... Q8DJ43 16355230
    54 2axt:H (3.0) BS03 CLA ? GO:0009523 ... Q8DJ43 16355230
    55 2axt:H (3.0) BS04 CLA ? GO:0009523 ... Q8DJ43 16355230
    56 2axt:I (3.0) BS01 CLA ? GO:0005737 ... Q8DJZ6 16355230
    57 2axt:K (3.0) BS01 CLA ? GO:0009523 ... Q9F1K9 16355230
    58 2axt:K (3.0) BS02 CLA ? GO:0009523 ... Q9F1K9 16355230
    59 2axt:K (3.0) BS03 CA ? GO:0009523 ... Q9F1K9 16355230
    60 2axt:V (3.0) BS01 HEM ? GO:0005506 ... P0A386 16355230
    61 2axt:X (3.0) BS01 CLA N/A N/A N/A 16355230
    62 2axt:Z (3.0) BS01 CLA ? GO:0009523 ... Q8DHJ2 16355230
    63 2axt:a (3.0) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 16355230
    64 2axt:a (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    65 2axt:a (3.0) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    66 2axt:a (3.0) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    67 2axt:a (3.0) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 16355230
    68 2axt:a (3.0) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 16355230
    69 2axt:a (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    70 2axt:a (3.0) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 16355230
    71 2axt:a (3.0) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    72 2axt:a (3.0) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 16355230
    73 2axt:a (3.0) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    74 2axt:b (3.0) BS01 CLA ? GO:0009521 ... Q8DIQ1 16355230
    75 2axt:b (3.0) BS02 CLA ? GO:0009521 ... Q8DIQ1 16355230
    76 2axt:b (3.0) BS03 CLA ? GO:0009521 ... Q8DIQ1 16355230
    77 2axt:b (3.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 16355230
    78 2axt:b (3.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 16355230
    79 2axt:b (3.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 16355230
    80 2axt:b (3.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 16355230
    81 2axt:b (3.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 16355230
    82 2axt:b (3.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 16355230
    83 2axt:b (3.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 16355230
    84 2axt:b (3.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 16355230
    85 2axt:b (3.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 16355230
    86 2axt:b (3.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 16355230
    87 2axt:b (3.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 16355230
    88 2axt:b (3.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 16355230
    89 2axt:b (3.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 16355230
    90 2axt:c (3.0) BS01 UNK ? GO:0005737 ... Q8DIF8 16355230
    91 2axt:c (3.0) BS02 CLA ? GO:0005737 ... Q8DIF8 16355230
    92 2axt:c (3.0) BS03 CLA ? GO:0005737 ... Q8DIF8 16355230
    93 2axt:c (3.0) BS04 CLA ? GO:0005737 ... Q8DIF8 16355230
    94 2axt:c (3.0) BS05 CLA ? GO:0005737 ... Q8DIF8 16355230
    95 2axt:c (3.0) BS06 CLA ? GO:0005737 ... Q8DIF8 16355230
    96 2axt:c (3.0) BS07 CLA ? GO:0005737 ... Q8DIF8 16355230
    97 2axt:c (3.0) BS08 CLA ? GO:0005737 ... Q8DIF8 16355230
    98 2axt:c (3.0) BS09 CLA ? GO:0005737 ... Q8DIF8 16355230
    99 2axt:c (3.0) BS10 CLA ? GO:0005737 ... Q8DIF8 16355230
    100 2axt:c (3.0) BS11 CLA ? GO:0005737 ... Q8DIF8 16355230
    101 2axt:c (3.0) BS12 CLA ? GO:0005737 ... Q8DIF8 16355230
    102 2axt:c (3.0) BS13 CLA ? GO:0005737 ... Q8DIF8 16355230
    103 2axt:c (3.0) BS14 CLA ? GO:0005737 ... Q8DIF8 16355230
    104 2axt:d (3.0) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    105 2axt:d (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    106 2axt:d (3.0) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    107 2axt:d (3.0) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    108 2axt:d (3.0) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    109 2axt:d (3.0) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    110 2axt:d (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    111 2axt:d (3.0) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    112 2axt:e (3.0) BS01 HEM ? GO:0005506 ... Q8DIP0 16355230
    113 2axt:f (3.0) BS01 HEM ? GO:0005506 ... Q8DIN9 16355230
    114 2axt:h (3.0) BS01 CLA ? GO:0009523 ... Q8DJ43 16355230
    115 2axt:h (3.0) BS02 CLA ? GO:0009523 ... Q8DJ43 16355230
    116 2axt:h (3.0) BS03 CLA ? GO:0009523 ... Q8DJ43 16355230
    117 2axt:h (3.0) BS04 CLA ? GO:0009523 ... Q8DJ43 16355230
    118 2axt:i (3.0) BS01 CLA ? GO:0005737 ... Q8DJZ6 16355230
    119 2axt:j (3.0) BS01 UNK ? GO:0009523 ... P59087 16355230
    120 2axt:k (3.0) BS01 CLA ? GO:0009523 ... Q9F1K9 16355230
    121 2axt:k (3.0) BS02 CLA ? GO:0009523 ... Q9F1K9 16355230
    122 2axt:k (3.0) BS03 CA ? GO:0009523 ... Q9F1K9 16355230
    123 2axt:v (3.0) BS01 HEM ? GO:0005506 ... P0A386 16355230
    124 2axt:z (3.0) BS01 CLA ? GO:0009523 ... Q8DHJ2 16355230
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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