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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jcu:A (3.2) BS01 OEX 1.10.3.9 GO:0005506 ... P69560 27251276
    2 3jcu:A (3.2) BS02 FE2 1.10.3.9 GO:0005506 ... P69560 27251276
    3 3jcu:A (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    4 3jcu:A (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    5 3jcu:A (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    6 3jcu:A (3.2) BS06 PHO 1.10.3.9 GO:0005506 ... P69560 27251276
    7 3jcu:A (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... P69560 27251276
    8 3jcu:A (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    9 3jcu:A (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    10 3jcu:A (3.2) BS10 BCT 1.10.3.9 GO:0005506 ... P69560 27251276
    11 3jcu:B (3.2) BS01 peptide ? GO:0009507 ... P04160 27251276
    12 3jcu:B (3.2) BS02 CLA ? GO:0009507 ... P04160 27251276
    13 3jcu:B (3.2) BS03 CLA ? GO:0009507 ... P04160 27251276
    14 3jcu:B (3.2) BS04 CLA ? GO:0009507 ... P04160 27251276
    15 3jcu:B (3.2) BS05 CLA ? GO:0009507 ... P04160 27251276
    16 3jcu:B (3.2) BS06 CLA ? GO:0009507 ... P04160 27251276
    17 3jcu:B (3.2) BS07 CLA ? GO:0009507 ... P04160 27251276
    18 3jcu:B (3.2) BS08 CLA ? GO:0009507 ... P04160 27251276
    19 3jcu:B (3.2) BS09 CLA ? GO:0009507 ... P04160 27251276
    20 3jcu:B (3.2) BS10 CLA ? GO:0009507 ... P04160 27251276
    21 3jcu:B (3.2) BS11 CLA ? GO:0009507 ... P04160 27251276
    22 3jcu:B (3.2) BS12 CLA ? GO:0009507 ... P04160 27251276
    23 3jcu:B (3.2) BS13 CLA ? GO:0009507 ... P04160 27251276
    24 3jcu:B (3.2) BS14 CLA ? GO:0009507 ... P04160 27251276
    25 3jcu:B (3.2) BS15 CLA ? GO:0009507 ... P04160 27251276
    26 3jcu:B (3.2) BS16 CLA ? GO:0009507 ... P04160 27251276
    27 3jcu:B (3.2) BS17 CLA ? GO:0009507 ... P04160 27251276
    28 3jcu:B (3.2) BS18 CLA ? GO:0009507 ... P04160 27251276
    29 3jcu:C (3.2) BS01 OEX ? GO:0005737 ... P06003 27251276
    30 3jcu:C (3.2) BS02 CLA ? GO:0005737 ... P06003 27251276
    31 3jcu:C (3.2) BS03 CLA ? GO:0005737 ... P06003 27251276
    32 3jcu:C (3.2) BS04 CLA ? GO:0005737 ... P06003 27251276
    33 3jcu:C (3.2) BS05 CLA ? GO:0005737 ... P06003 27251276
    34 3jcu:C (3.2) BS06 CLA ? GO:0005737 ... P06003 27251276
    35 3jcu:C (3.2) BS07 CLA ? GO:0005737 ... P06003 27251276
    36 3jcu:C (3.2) BS08 CLA ? GO:0005737 ... P06003 27251276
    37 3jcu:C (3.2) BS09 CLA ? GO:0005737 ... P06003 27251276
    38 3jcu:C (3.2) BS10 CLA ? GO:0005737 ... P06003 27251276
    39 3jcu:C (3.2) BS11 CLA ? GO:0005737 ... P06003 27251276
    40 3jcu:C (3.2) BS12 CLA ? GO:0005737 ... P06003 27251276
    41 3jcu:C (3.2) BS13 CLA ? GO:0005737 ... P06003 27251276
    42 3jcu:C (3.2) BS14 CLA ? GO:0005737 ... P06003 27251276
    43 3jcu:D (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P06005 27251276
    44 3jcu:D (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    45 3jcu:D (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    46 3jcu:D (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P06005 27251276
    47 3jcu:D (3.2) BS05 PHO 1.10.3.9 GO:0005506 ... P06005 27251276
    48 3jcu:D (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    49 3jcu:D (3.2) BS07 BCT 1.10.3.9 GO:0005506 ... P06005 27251276
    50 3jcu:D (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    51 3jcu:D (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    52 3jcu:E (3.2) BS01 peptide ? GO:0005506 ... P69383 27251276
    53 3jcu:E (3.2) BS02 HEM ? GO:0005506 ... P69383 27251276
    54 3jcu:F (3.2) BS01 HEM ? GO:0005506 ... P60128 27251276
    55 3jcu:G (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    56 3jcu:G (3.2) BS02 CLA ? GO:0009416 ... P12333 27251276
    57 3jcu:G (3.2) BS03 CLA ? GO:0009416 ... P12333 27251276
    58 3jcu:G (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    59 3jcu:G (3.2) BS05 CHL ? GO:0009416 ... P12333 27251276
    60 3jcu:G (3.2) BS06 CHL ? GO:0009416 ... P12333 27251276
    61 3jcu:G (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    62 3jcu:G (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    63 3jcu:G (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    64 3jcu:G (3.2) BS10 CLA ? GO:0009416 ... P12333 27251276
    65 3jcu:G (3.2) BS11 CLA ? GO:0009416 ... P12333 27251276
    66 3jcu:G (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    67 3jcu:G (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    68 3jcu:G (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    69 3jcu:G (3.2) BS15 CHL ? GO:0009416 ... P12333 27251276
    70 3jcu:G (3.2) BS16 CHL ? GO:0009416 ... P12333 27251276
    71 3jcu:H (3.2) BS01 CLA ? GO:0009507 ... P05146 27251276
    72 3jcu:H (3.2) BS02 CLA ? GO:0009507 ... P05146 27251276
    73 3jcu:H (3.2) BS03 CLA ? GO:0009507 ... P05146 27251276
    74 3jcu:H (3.2) BS04 CLA ? GO:0009507 ... P05146 27251276
    75 3jcu:I (3.2) BS01 CLA ? GO:0005737 ... P62103 27251276
    76 3jcu:I (3.2) BS02 CLA ? GO:0005737 ... P62103 27251276
    77 3jcu:K (3.2) BS01 CLA ? GO:0005737 ... P12163 27251276
    78 3jcu:K (3.2) BS02 CLA ? GO:0005737 ... P12163 27251276
    79 3jcu:K (3.2) BS03 CLA ? GO:0005737 ... P12163 27251276
    80 3jcu:N (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    81 3jcu:N (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    82 3jcu:N (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    83 3jcu:N (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    84 3jcu:N (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    85 3jcu:N (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    86 3jcu:N (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    87 3jcu:N (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    88 3jcu:N (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    89 3jcu:N (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    90 3jcu:N (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    91 3jcu:N (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    92 3jcu:N (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    93 3jcu:N (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    94 3jcu:N (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    95 3jcu:N (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    96 3jcu:R (3.2) BS01 CLA ? GO:0009416 ... F2Z293 27251276
    97 3jcu:R (3.2) BS02 CLA ? GO:0009416 ... F2Z293 27251276
    98 3jcu:R (3.2) BS03 CLA ? GO:0009416 ... F2Z293 27251276
    99 3jcu:R (3.2) BS04 CLA ? GO:0009416 ... F2Z293 27251276
    100 3jcu:R (3.2) BS05 CHL ? GO:0009416 ... F2Z293 27251276
    101 3jcu:R (3.2) BS06 CHL ? GO:0009416 ... F2Z293 27251276
    102 3jcu:R (3.2) BS07 CHL ? GO:0009416 ... F2Z293 27251276
    103 3jcu:R (3.2) BS08 CLA ? GO:0009416 ... F2Z293 27251276
    104 3jcu:R (3.2) BS09 CLA ? GO:0009416 ... F2Z293 27251276
    105 3jcu:R (3.2) BS10 CLA ? GO:0009416 ... F2Z293 27251276
    106 3jcu:R (3.2) BS11 CLA ? GO:0009416 ... F2Z293 27251276
    107 3jcu:R (3.2) BS12 CLA ? GO:0009416 ... F2Z293 27251276
    108 3jcu:R (3.2) BS13 CLA ? GO:0009416 ... F2Z293 27251276
    109 3jcu:R (3.2) BS14 CHL ? GO:0009416 ... F2Z293 27251276
    110 3jcu:S (3.2) BS01 CLA N/A GO:0009765 ... N/A 27251276
    111 3jcu:S (3.2) BS02 CHL N/A GO:0009765 ... N/A 27251276
    112 3jcu:S (3.2) BS03 CHL N/A GO:0009765 ... N/A 27251276
    113 3jcu:S (3.2) BS04 CLA N/A GO:0009765 ... N/A 27251276
    114 3jcu:S (3.2) BS05 CLA N/A GO:0009765 ... N/A 27251276
    115 3jcu:S (3.2) BS06 CLA N/A GO:0009765 ... N/A 27251276
    116 3jcu:S (3.2) BS07 CHL N/A GO:0009765 ... N/A 27251276
    117 3jcu:S (3.2) BS08 CHL N/A GO:0009765 ... N/A 27251276
    118 3jcu:S (3.2) BS09 CHL N/A GO:0009765 ... N/A 27251276
    119 3jcu:S (3.2) BS10 CLA N/A GO:0009765 ... N/A 27251276
    120 3jcu:S (3.2) BS11 CLA N/A GO:0009765 ... N/A 27251276
    121 3jcu:S (3.2) BS12 CLA N/A GO:0009765 ... N/A 27251276
    122 3jcu:S (3.2) BS13 CLA N/A GO:0009765 ... N/A 27251276
    123 3jcu:S (3.2) BS14 CLA N/A GO:0009765 ... N/A 27251276
    124 3jcu:S (3.2) BS15 CLA N/A GO:0009765 ... N/A 27251276
    125 3jcu:W (3.2) BS01 CLA ? GO:0009507 ... Q41387 27251276
    126 3jcu:Y (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    127 3jcu:Y (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    128 3jcu:Y (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    129 3jcu:Y (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    130 3jcu:Y (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    131 3jcu:Y (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    132 3jcu:Y (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    133 3jcu:Y (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    134 3jcu:Y (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    135 3jcu:Y (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    136 3jcu:Y (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    137 3jcu:Y (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    138 3jcu:Y (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    139 3jcu:Y (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    140 3jcu:Y (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    141 3jcu:Y (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    142 3jcu:Z (3.2) BS01 CLA ? GO:0009507 ... Q9M3M6 27251276
    143 3jcu:a (3.2) BS01 OEX 1.10.3.9 GO:0005506 ... P69560 27251276
    144 3jcu:a (3.2) BS02 FE2 1.10.3.9 GO:0005506 ... P69560 27251276
    145 3jcu:a (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    146 3jcu:a (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    147 3jcu:a (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    148 3jcu:a (3.2) BS06 PHO 1.10.3.9 GO:0005506 ... P69560 27251276
    149 3jcu:a (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... P69560 27251276
    150 3jcu:a (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    151 3jcu:a (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    152 3jcu:a (3.2) BS10 BCT 1.10.3.9 GO:0005506 ... P69560 27251276
    153 3jcu:b (3.2) BS01 peptide ? GO:0009507 ... P04160 27251276
    154 3jcu:b (3.2) BS02 CLA ? GO:0009507 ... P04160 27251276
    155 3jcu:b (3.2) BS03 CLA ? GO:0009507 ... P04160 27251276
    156 3jcu:b (3.2) BS04 CLA ? GO:0009507 ... P04160 27251276
    157 3jcu:b (3.2) BS05 CLA ? GO:0009507 ... P04160 27251276
    158 3jcu:b (3.2) BS06 CLA ? GO:0009507 ... P04160 27251276
    159 3jcu:b (3.2) BS07 CLA ? GO:0009507 ... P04160 27251276
    160 3jcu:b (3.2) BS08 CLA ? GO:0009507 ... P04160 27251276
    161 3jcu:b (3.2) BS09 CLA ? GO:0009507 ... P04160 27251276
    162 3jcu:b (3.2) BS10 CLA ? GO:0009507 ... P04160 27251276
    163 3jcu:b (3.2) BS11 CLA ? GO:0009507 ... P04160 27251276
    164 3jcu:b (3.2) BS12 CLA ? GO:0009507 ... P04160 27251276
    165 3jcu:b (3.2) BS13 CLA ? GO:0009507 ... P04160 27251276
    166 3jcu:b (3.2) BS14 CLA ? GO:0009507 ... P04160 27251276
    167 3jcu:b (3.2) BS15 CLA ? GO:0009507 ... P04160 27251276
    168 3jcu:b (3.2) BS16 CLA ? GO:0009507 ... P04160 27251276
    169 3jcu:b (3.2) BS17 CLA ? GO:0009507 ... P04160 27251276
    170 3jcu:b (3.2) BS18 CLA ? GO:0009507 ... P04160 27251276
    171 3jcu:c (3.2) BS01 OEX ? GO:0005737 ... P06003 27251276
    172 3jcu:c (3.2) BS02 CLA ? GO:0005737 ... P06003 27251276
    173 3jcu:c (3.2) BS03 CLA ? GO:0005737 ... P06003 27251276
    174 3jcu:c (3.2) BS04 CLA ? GO:0005737 ... P06003 27251276
    175 3jcu:c (3.2) BS05 CLA ? GO:0005737 ... P06003 27251276
    176 3jcu:c (3.2) BS06 CLA ? GO:0005737 ... P06003 27251276
    177 3jcu:c (3.2) BS07 CLA ? GO:0005737 ... P06003 27251276
    178 3jcu:c (3.2) BS08 CLA ? GO:0005737 ... P06003 27251276
    179 3jcu:c (3.2) BS09 CLA ? GO:0005737 ... P06003 27251276
    180 3jcu:c (3.2) BS10 CLA ? GO:0005737 ... P06003 27251276
    181 3jcu:c (3.2) BS11 CLA ? GO:0005737 ... P06003 27251276
    182 3jcu:c (3.2) BS12 CLA ? GO:0005737 ... P06003 27251276
    183 3jcu:c (3.2) BS13 CLA ? GO:0005737 ... P06003 27251276
    184 3jcu:c (3.2) BS14 CLA ? GO:0005737 ... P06003 27251276
    185 3jcu:d (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P06005 27251276
    186 3jcu:d (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    187 3jcu:d (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    188 3jcu:d (3.2) BS04 PHO 1.10.3.9 GO:0005506 ... P06005 27251276
    189 3jcu:d (3.2) BS05 PHO 1.10.3.9 GO:0005506 ... P06005 27251276
    190 3jcu:d (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    191 3jcu:d (3.2) BS07 BCT 1.10.3.9 GO:0005506 ... P06005 27251276
    192 3jcu:d (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    193 3jcu:d (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    194 3jcu:e (3.2) BS01 peptide ? GO:0005506 ... P69383 27251276
    195 3jcu:e (3.2) BS02 HEM ? GO:0005506 ... P69383 27251276
    196 3jcu:f (3.2) BS01 HEM ? GO:0005506 ... P60128 27251276
    197 3jcu:g (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    198 3jcu:g (3.2) BS02 CLA ? GO:0009416 ... P12333 27251276
    199 3jcu:g (3.2) BS03 CLA ? GO:0009416 ... P12333 27251276
    200 3jcu:g (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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