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BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3kzi:A (3.6) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 20558739
    2 3kzi:A (3.6) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    3 3kzi:A (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    4 3kzi:A (3.6) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 20558739
    5 3kzi:A (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    6 3kzi:A (3.6) BS06 OEC 1.10.3.9 GO:0005506 ... P0A444 20558739
    7 3kzi:A (3.6) BS07 BCR 1.10.3.9 GO:0005506 ... P0A444 20558739
    8 3kzi:A (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    9 3kzi:A (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    10 3kzi:A (3.6) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 20558739
    11 3kzi:A (3.6) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 20558739
    12 3kzi:B (3.6) BS01 CLA ? GO:0009521 ... Q8DIQ1 20558739
    13 3kzi:B (3.6) BS02 CLA ? GO:0009521 ... Q8DIQ1 20558739
    14 3kzi:B (3.6) BS03 CLA ? GO:0009521 ... Q8DIQ1 20558739
    15 3kzi:B (3.6) BS04 CLA ? GO:0009521 ... Q8DIQ1 20558739
    16 3kzi:B (3.6) BS05 CLA ? GO:0009521 ... Q8DIQ1 20558739
    17 3kzi:B (3.6) BS06 CLA ? GO:0009521 ... Q8DIQ1 20558739
    18 3kzi:B (3.6) BS07 CLA ? GO:0009521 ... Q8DIQ1 20558739
    19 3kzi:B (3.6) BS08 CLA ? GO:0009521 ... Q8DIQ1 20558739
    20 3kzi:B (3.6) BS09 CLA ? GO:0009521 ... Q8DIQ1 20558739
    21 3kzi:B (3.6) BS10 CLA ? GO:0009521 ... Q8DIQ1 20558739
    22 3kzi:B (3.6) BS11 CLA ? GO:0009521 ... Q8DIQ1 20558739
    23 3kzi:B (3.6) BS12 CLA ? GO:0009521 ... Q8DIQ1 20558739
    24 3kzi:B (3.6) BS13 CLA ? GO:0009521 ... Q8DIQ1 20558739
    25 3kzi:B (3.6) BS14 CLA ? GO:0009521 ... Q8DIQ1 20558739
    26 3kzi:B (3.6) BS15 CLA ? GO:0009521 ... Q8DIQ1 20558739
    27 3kzi:B (3.6) BS16 CLA ? GO:0009521 ... Q8DIQ1 20558739
    28 3kzi:B (3.6) BS17 BCR ? GO:0009521 ... Q8DIQ1 20558739
    29 3kzi:B (3.6) BS18 BCR ? GO:0009521 ... Q8DIQ1 20558739
    30 3kzi:C (3.6) BS01 CLA ? GO:0005737 ... Q8DIF8 20558739
    31 3kzi:C (3.6) BS02 CLA ? GO:0005737 ... Q8DIF8 20558739
    32 3kzi:C (3.6) BS03 CLA ? GO:0005737 ... Q8DIF8 20558739
    33 3kzi:C (3.6) BS04 CLA ? GO:0005737 ... Q8DIF8 20558739
    34 3kzi:C (3.6) BS05 CLA ? GO:0005737 ... Q8DIF8 20558739
    35 3kzi:C (3.6) BS06 CLA ? GO:0005737 ... Q8DIF8 20558739
    36 3kzi:C (3.6) BS07 CLA ? GO:0005737 ... Q8DIF8 20558739
    37 3kzi:C (3.6) BS08 CLA ? GO:0005737 ... Q8DIF8 20558739
    38 3kzi:C (3.6) BS09 CLA ? GO:0005737 ... Q8DIF8 20558739
    39 3kzi:C (3.6) BS10 CLA ? GO:0005737 ... Q8DIF8 20558739
    40 3kzi:C (3.6) BS11 CLA ? GO:0005737 ... Q8DIF8 20558739
    41 3kzi:C (3.6) BS12 CLA ? GO:0005737 ... Q8DIF8 20558739
    42 3kzi:C (3.6) BS13 BCR ? GO:0005737 ... Q8DIF8 20558739
    43 3kzi:C (3.6) BS14 BCR ? GO:0005737 ... Q8DIF8 20558739
    44 3kzi:C (3.6) BS15 CLA ? GO:0005737 ... Q8DIF8 20558739
    45 3kzi:C (3.6) BS16 BCR ? GO:0005737 ... Q8DIF8 20558739
    46 3kzi:D (3.6) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    47 3kzi:D (3.6) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    48 3kzi:D (3.6) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    49 3kzi:D (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    50 3kzi:D (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    51 3kzi:D (3.6) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    52 3kzi:D (3.6) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    53 3kzi:D (3.6) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    54 3kzi:D (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    55 3kzi:D (3.6) BS10 BCR 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    56 3kzi:E (3.6) BS01 HEM ? GO:0005506 ... Q8DIP0 20558739
    57 3kzi:F (3.6) BS01 BCR ? GO:0005506 ... Q8DIN9 20558739
    58 3kzi:F (3.6) BS02 HEM ? GO:0005506 ... Q8DIN9 20558739
    59 3kzi:H (3.6) BS01 CLA ? GO:0009523 ... Q8DJ43 20558739
    60 3kzi:H (3.6) BS02 CLA ? GO:0009523 ... Q8DJ43 20558739
    61 3kzi:H (3.6) BS03 CLA ? GO:0009523 ... Q8DJ43 20558739
    62 3kzi:H (3.6) BS04 CLA ? GO:0009523 ... Q8DJ43 20558739
    63 3kzi:H (3.6) BS05 BCR ? GO:0009523 ... Q8DJ43 20558739
    64 3kzi:I (3.6) BS01 CLA ? GO:0005737 ... Q8DJZ6 20558739
    65 3kzi:I (3.6) BS02 CLA ? GO:0005737 ... Q8DJZ6 20558739
    66 3kzi:J (3.6) BS01 BCR ? GO:0009523 ... P59087 20558739
    67 3kzi:J (3.6) BS02 BCR ? GO:0009523 ... P59087 20558739
    68 3kzi:K (3.6) BS01 peptide ? GO:0009523 ... Q9F1K9 20558739
    69 3kzi:K (3.6) BS02 CLA ? GO:0009523 ... Q9F1K9 20558739
    70 3kzi:K (3.6) BS03 BCR ? GO:0009523 ... Q9F1K9 20558739
    71 3kzi:K (3.6) BS04 BCR ? GO:0009523 ... Q9F1K9 20558739
    72 3kzi:K (3.6) BS05 CLA ? GO:0009523 ... Q9F1K9 20558739
    73 3kzi:K (3.6) BS06 CA ? GO:0009523 ... Q9F1K9 20558739
    74 3kzi:O (3.6) BS01 CA ? GO:0009523 ... P0A431 20558739
    75 3kzi:V (3.6) BS01 HEM ? GO:0005506 ... P0A386 20558739
    76 3kzi:X (3.6) BS01 CLA ? GO:0009523 ... Q9F1R6 20558739
    77 3kzi:X (3.6) BS02 BCR ? GO:0009523 ... Q9F1R6 20558739
    78 3kzi:Z (3.6) BS01 peptide ? GO:0009523 ... Q8DHJ2 20558739
    79 3kzi:Z (3.6) BS02 CLA ? GO:0009523 ... Q8DHJ2 20558739
    80 3kzi:Z (3.6) BS03 BCR ? GO:0009523 ... Q8DHJ2 20558739

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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