Detailed GPCR-I-TASSER Statistics for Q8NFJ5

Submitted Sequence

>sp|Q8NFJ5|RAI3_HUMAN
MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCKVQDSN
RRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLT
KLVRGRKPLSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLL
LTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRRW
DDTILSSALAANGWVFLLAYVSPEFWLLTKQRNPMDYPVEDAFCKPQLVKKSYGVENRAY
SQEEITQGFEETGDTLYAPYSTHFQLQNQPPQKEFSIPRAHAWPSPYKDYEVKKEGS

Predicted Secondary Structure

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340
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Sequence MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCKVQDSNRRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLTKLVRGRKPLSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLLLTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRRWDDTILSSALAANGWVFLLAYVSPEFWLLTKQRNPMDYPVEDAFCKPQLVKKSYGVENRAYSQEEITQGFEETGDTLYAPYSTHFQLQNQPPQKEFSIPRAHAWPSPYKDYEVKKEGS
Prediction CCCCCCCCCCCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHSSSSSSSSCCHHHHCCHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCSSSSSSSSHHHHHHHHHSSSSSSCCCCCCCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Conf.Score 998899876789983102114653318999999999999999999841378963213634311402899999999999998885154787421066899999999999999999999999997268799752426874231254562401145503677777752021356562678799999999999999999999616476544322416999999999999999999456888661358899999999999998751857999745666444664121025765666531245334633444322467884068765651555789998753778999999854566788899

Predicted Solvent Accessibility

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                 
Sequence MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCKVQDSNRRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLTKLVRGRKPLSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLLLTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRRWDDTILSSALAANGWVFLLAYVSPEFWLLTKQRNPMDYPVEDAFCKPQLVKKSYGVENRAYSQEEITQGFEETGDTLYAPYSTHFQLQNQPPQKEFSIPRAHAWPSPYKDYEVKKEGS
Prediction 862433630365034301300324300000000101211311231221010202213333443310000000111231110000000313310000011000201000000000000100100234323322210000001131013101110000022334423231314132100000021221122201100000002414623210000000031121012111000010345341300000000012010000001201000013344455243652344444344213141331134334643564443333223230334536473423013143344335424336668

Predicted Normalized B-Factor


Read more about predicted normalized B-factor

  Top 10 Templates Used by GPCR-I-TASSER


Rank PDB
Hit		Iden1Iden2Cov.Norm.
Z-score		Download
Align.		                   20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                 
Sec.Str
Seq		CCCCCCCCCCCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHSSSSSSSSCCHHHHCCHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCSSSSSSSSHHHHHHHHHSSSSSSCCCCCCCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MATTVPDGCRNGLKSKYYRLCDKAEAWGIVLETVATAGVVTSVAFMLTLPILVCKVQDSNRRKMLPTQFLFLLGVLGIFGLTFAFIIGLDGSTGPTRFFLFGILFSICFSCLLAHAVSLTKLVRGRKPLSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLLLTYVLFLMALTFLMSSFTFCGSFTGWKRHGAHIYLTMLLSIAIWVAWITLLMLPDFDRRWDDTILSSALAANGWVFLLAYVSPEFWLLTKQRNPMDYPVEDAFCKPQLVKKSYGVENRAYSQEEITQGFEETGDTLYAPYSTHFQLQNQPPQKEFSIPRAHAWPSPYKDYEVKKEGS
14or2A 0.15 0.13 0.69 1.74Download -----------------VRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLYRD--TPVVKSSSRELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILRKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKTR--NVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNY----KIITTCFAVSLSVTVALGCMFTPKMYIIIAKPE------------------------------------------------------------------------------------
24rdqA 0.09 0.19 0.94 1.54Download VTYTNRVADARLGTFSQLLLQWKGSIYKLLYSEFLIFISLYFAISLVY------------RLILSESQRLMFEKLALYCN---------SYAELIPVSFVLGFYVSLVVSWPDRIMNLVSCNVDGEDEYGRLLRRTLMRYSNLCSVLILRSVSTAVYKRFPSMEHVVRAGLMTPEEHKKFEKFWIPCVWFSNLAVKARNEGRIRD--SVLLQGILNELNTLRSQCGRLYGYDWISIPLVYTQVVTVAVYSFFLACLIGRQFLDPEKAYPGHELDLFVPVFTFLQINPFGEDDDDFETNWLIDRNLQVSLMAVDEMHQDLPILEKDLYWNEPDPQPPYTAATAEYKRPSFLGSTFDIS
34or2A 0.14 0.14 0.70 3.18Download -----------------VRYLEWSNIESIIAIAFSCLGILVTLFVTLIFV--LYRDTPVVKSSSRELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILAKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMYPSIKEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNY----KIITTCFAVSLSVTVALGCMFTPKMYIIIAKPERN----------------------------------------------------------------------------------
43orgA 0.12 0.21 0.89 1.10Download IAHQFYR------LGVFKELCTDRALRLQTLAAACAVGLASSFGIETIASFYLVQ--------------AFWKGVLSALSGAIVY--ELDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHYPGTNR--------YFLVGVVALFASALQYPFPRATINDLFKAVTELIKFILVALSIFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLF-----------PDSEPQHIKGILEKFPNRLFPVIDANGYLLGAISRKEIVDRLQHVVVPCDVSP
54or2A 0.13 0.13 0.69 4.06Download -----------------VRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLY--RDTPVVKSSSRELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILRKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSEVYLICNTSN-LGVVAPLGYNGLLIMSCTYYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYK--IITTCFAVSLSVTVALGCMFTPKMYIIIAKPE--------------------------------------------------------------------------------------
63wajA 0.07 0.22 0.96 1.47Download PFTYYPYGSYTHFGPIAGIIFSATSGESLRAVLAFIPAIGGVVIAAFLIAIVPGQFLQRSILGFNDHHIWEAFWQVSALGTFLLAYNRWKGHDAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFST-------IFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALILIWAIAMFIALWGQNRFAYYFAAVSAVYSALALSVVF--------DKLHFRVAFALLIALAAIYPTYILADAQSSYAGGPNKQWYDALTWMRENTPDGEKYDEYYLQLYPTPQSNKEPFSYPFETYGANPFQA
74or2 0.15 0.16 0.73 6.20Download TTRNAYIQKYL-IPVRYL---EWSNIESIIAIAFSCLGILVTLFVTLIFVLDTPVVKSSSRE-L---CYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILARKPFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSN-Y---KIITTCFAVSLSVTVALGCMFTPKMYIIIAKPE------------------------------------------------------------------------------------
85tgzA 0.08 0.21 0.95 1.03Download ---GGRGENFMDIECFMVLNPSQQLAIAVLSLTLGTFTVLENLLVLCVILHSRSLRCRP--------SYHFIGSLAVADLLGSVIFRKDSRNVFLFKLGGVTASFTASVGSLFLAAIDRYISIHRPRIVTRPKAVVAFCLMWTIAIVIAVLPLLGWNCEKLQSVCSDIFPHIDKTYLMFWIGVVSVLLLFIVYAYMYILWKAHSHAVAKALIVYGSTTGNTEYTAETIARELADAG---YEVDSRDAASVEAGGL---FEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVR
94oo9 0.14 0.15 0.69 4.53Download ---------------SPVQYLRWGDPAPIAAVVFACLGLLATLFVTVVFI--IYRDTPVVKSSSRELCYIILAGICLGYLCTF-LIAKPKQIYCYLQRIGIGLSPAMSYSALVTKTYRAARILAMSKKKISAAQLVIAFILICIQLGIIVALFIMEPPDIM----VYLICNTTNLGVVAPLGYNGLLILACTFYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKI--ITMCFSVSLSATVALGCMFVPKVYIILAKPERN------------------------------------------------------------------------------------
104or2A 0.15 0.13 0.69 2.64Download -----------------VRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLY--RDTPVVKSSSRELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILRKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPPSIKEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKT--RNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGS----NYKIITTCFAVSLSVTVALGCMFTPKMYIIIAKPE------------------------------------------------------------------------------------
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates used by GPCR-I-TASSER.
(c)Ident1 is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(d)Ident2 is the percentage sequence identity of the whole template chains with query sequence.
(e)Cov. represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score >1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)The top 10 alignments reported above (in order of their ranking) are from the following threading programs:
       1: MUSTER   2: PROSPECT2   3: FFAS-3D   4: pGenTHREADER   5: SPARKS-X   6: PROSPECT2   7: HHSEARCH2   8: SP3   9: HHSEARCH I   10: Neff-PPAS   

  Top 5 Models Predicted by GPCR-I-TASSER

Generated 3D models Estimated local accuracy of models
  • Download Model 1
  • C-score=-2.36 (Read more about C-score)
  • Estimated TM-score = 0.44±0.14
  • Estimated RMSD = 12.2±4.4Å

  • Download Model 2
  • C-score = -2.42

  • Download Model 3
  • C-score = -2.65

  • Download Model 4
  • C-score = -2.80

  • Download Model 5
  • C-score = -2.82


    • [Click on Q8NFJ5_results.tar.bz2 to download the tarball file including all modeling results listed on this page]