Detailed GPCR-I-TASSER Statistics for Q9BXE9

Submitted Sequence

>sp|Q9BXE9|VN1R3_HUMAN
MASKDFAIGMILLSQIMVGFLGNFFLLYHYSFLCFTRGMLQSTDLILKHLTIANSLVILS
KGIPQTMAAFGLKDSLSDIGCKFVFYVHRVGRAVCVGNACLLSVFQVITISPSEFRWAEL
KLHAHKYIRSFILVLCWILNTLVNITVLLHVTGKWNSINSTKTNDYGYCSGGSRSRIPHS
LHIVLLSSLDVLCLGLMTLASGSMVFILHRHKQQVQHIHGTNLSARSSPESRVTQSILVL
VSTLCYFTRSPPSLHMSLFPNPSWWLLNTSALITACFPMVSPFVLMSRHPRIPRLGSACC
GRNPQFPKLVR

Predicted Secondary Structure

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |           
Sequence MASKDFAIGMILLSQIMVGFLGNFFLLYHYSFLCFTRGMLQSTDLILKHLTIANSLVILSKGIPQTMAAFGLKDSLSDIGCKFVFYVHRVGRAVCVGNACLLSVFQVITISPSEFRWAELKLHAHKYIRSFILVLCWILNTLVNITVLLHVTGKWNSINSTKTNDYGYCSGGSRSRIPHSLHIVLLSSLDVLCLGLMTLASGSMVFILHRHKQQVQHIHGTNLSARSSPESRVTQSILVLVSTLCYFTRSPPSLHMSLFPNPSWWLLNTSALITACFPMVSPFVLMSRHPRIPRLGSACCGRNPQFPKLVR
Prediction CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCSSSSSSSSHHHCCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHCSSSSSSSCCCCCCCCCCCCCCSSSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHSSHHHHHHHHCHHHCHHHSSCCCCCHHHHHHHHHCCCCCCCCCCC
Conf.Score 98788899999999999999999999999999998388889799999999999999999985899999975522489983289999807737203578999998761897189707665425347633799999999999987612579998277045555214675534316746789999999999989999999877889999999978988633089999998859999999999999999999878987566321798221009999960231536456013896278999999686788976569

Predicted Solvent Accessibility

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |           
Sequence MASKDFAIGMILLSQIMVGFLGNFFLLYHYSFLCFTRGMLQSTDLILKHLTIANSLVILSKGIPQTMAAFGLKDSLSDIGCKFVFYVHRVGRAVCVGNACLLSVFQVITISPSEFRWAELKLHAHKYIRSFILVLCWILNTLVNITVLLHVTGKWNSINSTKTNDYGYCSGGSRSRIPHSLHIVLLSSLDVLCLGLMTLASGSMVFILHRHKQQVQHIHGTNLSARSSPESRVTQSILVLVSTLCYFTRSPPSLHMSLFPNPSWWLLNTSALITACFPMVSPFVLMSRHPRIPRLGSACCGRNPQFPKLVR
Prediction 64333211111032123333333320132100000353322111000100131122103012311000000232114121000010101011110000000001200000013322023022301210101101230331131223000202033333233333331101012333321100010102312311000100100000001212320220234532433311320010000000111131113200100013342100100110201211200000000214201200200032335114327

Predicted Normalized B-Factor


Read more about predicted normalized B-factor

  Top 10 Templates Used by GPCR-I-TASSER


Rank PDB
Hit		Iden1Iden2Cov.Norm.
Z-score		Download
Align.		                   20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |           
Sec.Str
Seq		CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCSSSSSSSSHHHCCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHCSSSSSSSCCCCCCCCCCCCCCSSSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHSSHHHHHHHHCHHHCHHHSSCCCCCHHHHHHHHHCCCCCCCCCCC
MASKDFAIGMILLSQIMVGFLGNFFLLYHYSFLCFTRGMLQSTDLILKHLTIANSLVILSKGIPQTMAAFGLKDSLSDIGCKFVFYVHRVGRAVCVGNACLLSVFQVITISPSEFRWAELKLHAHKYIRSFILVLCWILNTLVNITVLLHVTGKWNSINSTKTNDYGYCSGGSRSRIPHSLHIVLLSSLDVLCLGLMTLASGSMVFILHRHKQQVQHIHGTNLSARSSPESRVTQSILVLVSTLCYFTRSPPSLHMSLFPNPSWWLLNTSALITACFPMVSPFVLMSRHPRIPRLGSACCGRNPQFPKLVR
14grvA 0.13 0.20 0.90 1.21Download DIYSKVLVTAIYLALFVVGTVGNSVTLFTLAR-----KSLQTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAIC----HPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGL-VCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVM-------------GSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDQWTTFLFDFYHYFYMLTNALAYASS--AINPILYNLVSAN------FR
25tjvA 0.12 0.21 0.86 1.92Download --SQQLAIAVLSLTLGTFTVLENLLVL--CVILHSRSLRCRPSYHFIGSLAVADLLGSVIF-VYSFIDFHVFHRKDSRNVFLFKLGGVTASFTASVGSLFLAAIDRYISIHRPLAYKRIVTRP----KAVVAFCLMWTIAIVIAVLPLL---------GWNCEKLQSVCSDIFPHIDETYLMFWIGVT--SVLLLFIVYAYMYILWKAGKRAMSFSD--------QARMDIRLAKTLVLILVVLIICWGPLLAIMVYDVFGKMKTVFAFCSMLCLLNSTVNPIIYALRSKDLRHAFR--------------
34xt1A 0.13 0.20 0.86 1.33Download LNQSKPVTLFLYGVVFLFGSIGNFLVIFTITW----RRRIQSGDVYFINLAAADLLFVCT--LPLWMQYLLDSVP-----CTLLTACFYVAMFASLCFITEIALDRYYAIVYMRYR--------PVKQACLFSIFWWIFAVIIAIPHFMVV-----TKKDNQCMTDY---DYLEVSYPIILNVELMLGAFVIPLSVISYCYYRISRIVA----------VSQSRHKGRIVRVLIAVVLVFIIFWLPYHLTLFVDTLKLLKWISSRALILTESLAFCHCCLNPLLYVFVGTKFRQELHCLLAEFR-------
44djh 0.15 0.24 0.93 1.54Download SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIR---YTKMKTATNIYIFNLALADALVTTT-MPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV-KALDF--RTPLKAKII-NICIWLLSSSVGISAIVLGGTKVR-----EDVDVIECSLQFPDDDYDLFMICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSGNIEKTAYREKDRNLRRITRLVLVVVAVFVVCTPIHIILVEALGS-AALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFCFP---------
53odu 0.12 0.17 0.94 1.27Download ANFNKIFLPTIYSIIFLTGIVGNGLVILVM----GYQKLRSMTDKYRLHLSVADLLFVIT--LPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVATNSQ-RPRKLLAEK----VVYVGVWIPALLLTIPDFIFANVSE-------ADDRYICDRFYPNDLWVVVFQFHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISSFILLEVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ
64grvA 0.11 0.20 0.88 1.35Download -IYSKVLVTAIYLALFVVGTVGNSVTLFTLAR----KSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAIC----HPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTH-PGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMS------------GSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYIFYHYFYMLTNALAYASSAINPILYNLVSANFRQV----------------
73uon 0.12 0.19 0.91 1.71Download ----VVFIVLVAGSLSLVTIIGNILVMVSI---KVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGV-R-TVEDG------ECYIQFFSN--AAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEGTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLM----------
84n6hA 0.15 0.21 0.91 2.02Download SLALAIAITALYSAVCAVGLLGNVLVMF---GIVRYTKMKTATNIYIFNLALADALATST-LPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRD-------------GVCMLQFPSYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSV------RLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLCRKPCG------
94djhA 0.16 0.20 0.89 1.31Download SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIR----TKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPF-GDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVHPVKALDFRTPLK-----AKIINICIWLLSSSVGISAIVLGGTK-----VREDVDVIECSLQFPDSWWDLFMKICVFIFAVIPVLIIIVCYTLMILRLKSVRLLSDR-----------NLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSAASSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFC-----FP----
104ww3A 0.14 0.19 0.95 1.74Download PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTK---TKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIRPMAASK-----KMSHRRAFIMIIFVWLWSVLWAIGPIF------GWGAYTLEGVLCNCSFISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASPMIYSVSHPKFREAISQTFPWVLTCCQFDD
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates used by GPCR-I-TASSER.
(c)Ident1 is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(d)Ident2 is the percentage sequence identity of the whole template chains with query sequence.
(e)Cov. represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score >1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)The top 10 alignments reported above (in order of their ranking) are from the following threading programs:
       1: MUSTER   2: FFAS-3D   3: SPARKS-X   4: HHSEARCH2   5: HHSEARCH I   6: Neff-PPAS   7: HHSEARCH   8: pGenTHREADER   9: wdPPAS   10: cdPPAS   

  Top 5 Models Predicted by GPCR-I-TASSER

Generated 3D models Estimated local accuracy of models
  • Download Model 1
  • C-score=-0.49 (Read more about C-score)
  • Estimated TM-score = 0.65±0.13
  • Estimated RMSD = 7.3±4.2Å

  • Download Model 2
  • C-score = -2.89

  • Download Model 3
  • C-score = -2.93

  • Download Model 4
  • C-score = -1.01

  • Download Model 5
  • C-score = -3.32


    • [Click on Q9BXE9_results.tar.bz2 to download the tarball file including all modeling results listed on this page]