GPCR-I-TASSER results for Q6IFD1

[Click on Q6IFD1_results.tar.bz2 to download the tarball file including all modeling results listed on this page]

  Submitted Sequence

>Q6IFD1
MGNLGMIMVIRINPKLHTPMYFFLSHLSFVDFCYSTTITPKLLENLVVEDRIISFTGCIM
QFFFACIFVVTETFMLAAMAYDRFVAVCNPLLYTVAMSQRLCSLLVAASYSWSLVCSLTY
TYFLLTLSFCRTNFINNFVCEHAAIVAVSCSDPYMSQKVILVSATFNEISSLVIILTSYA
FIFITVMKMPSTGGRKKAFSTCASHLTAITIFHGTILFLYCVPNSKSSWLMVKVASVFYT
VVIPMLNPLIYSLRNKDVKETVRKLVITKLLCHKM

  Predicted Secondary Structure

Sequence                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |               
MGNLGMIMVIRINPKLHTPMYFFLSHLSFVDFCYSTTITPKLLENLVVEDRIISFTGCIMQFFFACIFVVTETFMLAAMAYDRFVAVCNPLLYTVAMSQRLCSLLVAASYSWSLVCSLTYTYFLLTLSFCRTNFINNFVCEHAAIVAVSCSDPYMSQKVILVSATFNEISSLVIILTSYAFIFITVMKMPSTGGRKKAFSTCASHLTAITIFHGTILFLYCVPNSKSSWLMVKVASVFYTVVIPMLNPLIYSLRNKDVKETVRKLVITKLLCHKM
PredictionCCHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCCCHCCCHHHHHHHHHHHHHHHCSSSSCCCCCCCCCCCCSSSSSSCCCHHCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCC
Conf.Score96413028342088877728888767998834710125299999970489788589999999999999999999999997542340162102882377889999999999999999999999985530789890587336838888781468637788888888999999899999999999999813477776754200558889979999855502484789998887897899881210312334745046498999999999664241669

  Predicted Solvent Accessibility

Sequence                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |               
MGNLGMIMVIRINPKLHTPMYFFLSHLSFVDFCYSTTITPKLLENLVVEDRIISFTGCIMQFFFACIFVVTETFMLAAMAYDRFVAVCNPLLYTVAMSQRLCSLLVAASYSWSLVCSLTYTYFLLTLSFCRTNFINNFVCEHAAIVAVSCSDPYMSQKVILVSATFNEISSLVIILTSYAFIFITVMKMPSTGGRKKAFSTCASHLTAITIFHGTILFLYCVPNSKSSWLMVKVASVFYTVVIPMLNPLIYSLRNKDVKETVRKLVITKLLCHKM
Prediction73001003001001400100010020001100110010003000200254320103000101100000020001000000000000002112020300330000001201210131031101100303014412010000032100100023231201200220132233133103303320220001031363231010011103100202320110000103253133341000021033103300300002133014002200432310345
Values range from 0 (buried residue) to 9 (highly exposed residue)

  Top 5 Models predicted by GPCR-I-TASSER

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
C-score=0.74
C-score=-2.20
C-score=-2.15
C-score=-2.08
C-score=-4.27
 
Estimated accuracy of Model1: 0.81±0.09 (TM-score)    4.5±3.0Å (RMSD)    (Read more about C-score of generated models)
Estimated local accuracy of Model1: The estiamted distances (between model and native structure, shown in 1st figure) for residues are more reliable for aligned (i.e., residues with high alignment coverage shown in 2nd figure) α-helix and β-strand regions.
Download estimated local accuracy of Model2, Model3, Model4, Model5

  Top 10 templates used by GPCR-I-TASSER

Rank PDB
Hit
Iden1Iden2Cov.Norm.
Z-score
Download
Align.
                   20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |               
Sec.Str
Seq
CCHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCCCHCCCHHHHHHHHHHHHHHHCSSSSCCCCCCCCCCCCSSSSSSCCCHHCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCC
MGNLGMIMVIRINPKLHTPMYFFLSHLSFVDFCYSTTITPKLLENLVVEDRIISFTGCIMQFFFACIFVVTETFMLAAMAYDRFVAVCNPLLYTVAMSQRLCSLLVAASYSWSLVCSLTYTYFLLTLSFCRTNFINNFVCEHAAIVAVSCSDPYMSQKVILVSATFNEISSLVIILTSYAFIFITVMKMPSTGGRKKAFSTCASHLTAITIFHGTILFLYCVPNSKSSWLMVKVASVFYTVVIPMLNPLIYSLRNKDVKETVRKLVITKLLCHKM
14iaqA 0.17 0.20 0.90 2.01Download LSNAFVIATVYRTRKLHTPANYLIASLAVTDLLVSILVMPISTMYTVTGRWTLGQVVCDFWLSSDITCCTASIWHLCVIALDRYWAITDAVEYSAKRTPKRAAVMIALVWVFSISISLP-------PFFWRQAS--------------ECVVNTDHILYTVYSTVGAFYFPTLLLIALYGRIYVEARSRIILLMAARERKATKTLGIILGAFIVCWLPFFIISLVMPIHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHKLIRFK------
23uonA 0.18 0.18 0.93 2.92Download IGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIV--GVRTVEDGECYIQFF---------SNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLM--------
33emlA 0.17 0.22 0.94 3.95Download LGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS---GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGGCGEGQVACLFEDVVP-----------MNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLVHAAKSLAI-IVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ--
42ydoA 0.17 0.20 0.99 4.08Download LGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFAC-VLVPLLLMLGVYLRIFLAARRLKQMESTLQKEVHAAKSLAIIVGLFALCWFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQE
53emlA 0.18 0.22 0.94 5.42Download IGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLNCGQSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPL-----------LLMLGVYLRIFLAARRQLVHAAKSLAIIVGLFALC-WLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ--
62z73A 0.20 0.23 0.88 1.78Download GGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAI------------------------GPIFLCNCSRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSN-KAQAGANAEMRLAKISIVIVSQFYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTF---------
72rh1A 0.18 0.17 0.93 3.32Download FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH----WYRATHQEAINCYAE----ETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNRLKEHKALKTLG---IIMGTFTLCWLIVNIVHVIQDNLIRKEILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCL-------
83emlA 0.17 0.22 0.91 2.64Download -GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDV--------VPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQ-----LVHAAKSLAIIVGLFALCWLPLHIINCFTFFCHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI----------
93emlA 0.17 0.22 0.9413.14Download LGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMNNCGQSQGCGEGQVACLFEDVVP-----------MNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLVHAAKSLAII-VGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ--
103emlA 0.17 0.22 0.94 4.70Download LGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGGCGEGQVACLFEDVVP-----------MNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLVHAAKSLAIIVGLFALCWLPLHIINCF-TFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ--
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates used by I-TASSER.
(c)Ident1 is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(d)Ident2 is the percentage sequence identity of the whole template chains with query sequence.
(e)Cov. represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score >1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)The top 10 alignments reported above (in order of their ranking) are from the following threading programs:
       1: SPARKS-X   2: HHSEARCH2   3: MUSTER   4: SP3   5: PROSPECT2   6: FFAS03   7: HHSEARCH   8: PRC   9: dPPAS   10: Neff-PPAS   


[Click on Q6IFD1_results.tar.bz2 to download the tarball file including all modeling results listed on this page]



 Please cite following article when you use the GPCR-I-TASSER server:
J Zhang, J Yang, R Jang, Y Zhang. GPCR-I-TASSER: A new hybrid approach to G protein-coupled receptor structure modeling with application to the human genome, submitted, 2014.