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I-TASSER QUARK LOMETS COACH COFACTOR MetaGO MUSTER SEGMER FG-MD ModRefiner REMO SPRING COTH BSpred SVMSEQ ANGLOR BSP-SLIM SAXSTER ThreaDom ThreaDomEx EvoDesign GPCR-I-TASSER BindProf BindProfX ResQ IonCom STRUM DAMpred

TM-score TM-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR NeBcon WDL-RF ATPbind

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP TM-fold DECOYS POTENTIAL RW HPSF THE-DB CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13


LOMETS (Local Meta-Threading-Server) is an on-line web service for template-based protein structure prediction. It generates 3D models by collecting high-scoring structural templates from 11 locally-installed threading programs (CEthreader, FFAS3D, HHpred, HHsearch, MUSTER, Neff-MUSTER, PPAS, PRC, PROSPECT2, SP3, and SparksX ). A detailed description of the server can be seen in the About LOMETS page. Please post your questions and comments about LOMETS at the Service System Discussion Board.

Updates: LOMETS has been updated to LOMETS-II with major updates including: (i) while template libraries in former LOMETS are generated separately for different threading programs, which can result in inconsistent update and completeness of template structures, an unified and comprehensive template library is now created and weekly updated for all threading programs; (ii) a deep multiple sequence alignment (MSA) approach is developed to create deep sequence profiles for all template proteins, which significantly improves the accuracy of almost all the profile- and HHM-based threading alignments; (iii) more than half of the old threading programs were renewed and/or replaced by state-of-the-art methods, including the cutting-edge contact-based threading algorithms; (iv) completely redesigned the output page which contains now structure-based function annotations derived from threading templates.

The output of the updated LOMETS server includes (see an illustrative example):


[Zhang Lab Homepage]   [Forum]   [Example]   [About LOMETS]

LOMETS On-line (an illustrative example)



LOMETS Resource: LOMETS Download:


References:

yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218