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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP TM-fold DECOYS POTENTIAL RW HPSF CASP7 CASP8 CASP9 CASP10 CASP11 CASP12

RW is distance-dependent atomic potential for protein structure modeling and structure decoy recognition. It was derived from 1,383 high-resolution PDB structures using an ideal random-walk chain as the reference state. The RW potential has been extensively optimized and tested on a variety of protein structure decoy sets and demonstrates a significant power in protein structure recognition and a strong correlation with the RMSD of decoys to the native structures. [Readme]


  • Download the calRW executable program for Linux system: calRW in 64-bit version or calRW in 32-bit version.

  • Download the calRWplus executable program for Linux system: calRWplus in 64-bit version or calRWplus in 32-bit version.

  • Click The cleaned Rykunov and Fiser's Decoy Sets to download the cleaned Rykunov and Fiser's Decoy Sets.

  • Click I-TASSER Decoy Sets to download the I-TASSER Decoy sets, which was used to test the potentials.

  • Click I-TASSER potential to download the composite I-TASSER potential.


    References:
    Zhang J, Zhang Y (2010) A Novel Side-Chain Orientation Dependent Potential Derived from Random-Walk Reference State for Protein Fold Selection and Structure Prediction. PLoS ONE 5(10): e15386. (Download the PDF file).

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