Hi,
I had following exception while running a small protein prediction? Is there anything i can do to solve this issue? It seems its still running, but i'm not sure if it will give a proper result or not.
Your setting is:
-libdir =/usr/local/I-TASSER/
-seqname =Dummy
-datadir =/home/asyavuz/Dummy
-usrname =asyavuz
-runstyle =serial
-idcut =1
-ntemp =20
-nmodel =5
1. make seq.txt and rmsinp
2.1 run Psi-blast
2.1.2 run makemat
2.1.3 run PSSpred
2.3 run solve
2.3 run solve
2.4 run pairmod
2.4.1 removing homology templates based on and 1
2.4.2 running pair ................
FORTRAN STOP
3.1 do threading
start serial threading PPA
/tmp/asyavuz/ITDummy
/home/asyavuz/Dummy/PPA_Dummy
hostname: zoe
starting time: Wed Mar 6 14:42:08 MSK 2013
pwd: /tmp/asyavuz/ITDummy
running zalign .....
ending time: Wed Mar 6 14:44:08 MSK 2013
start serial threading dPPA
/tmp/asyavuz/ITDummy
/home/asyavuz/Dummy/dPPA_Dummy
hostname: zoe
starting time: Wed Mar 6 14:44:09 MSK 2013
pwd: /tmp/asyavuz/ITDummy
running zalign .....
ending time: Wed Mar 6 14:49:05 MSK 2013
start serial threading dPPA2
/tmp/asyavuz/ITDummy
/home/asyavuz/Dummy/dPPA2_Dummy
hostname: zoe
starting time: Wed Mar 6 14:49:06 MSK 2013
pwd: /tmp/asyavuz/ITDummy
running zalign .....
ending time: Wed Mar 6 14:53:58 MSK 2013
start serial threading sPPA
/tmp/asyavuz/ITDummy
/home/asyavuz/Dummy/sPPA_Dummy
hostname: zoe
starting time: Wed Mar 6 14:53:59 MSK 2013
pwd: /tmp/asyavuz/ITDummy
running zalign .....
ending time: Wed Mar 6 14:58:51 MSK 2013
start serial threading MUSTER
/tmp/asyavuz/ITDummy
/home/asyavuz/Dummy/MUSTER_Dummy
hostname: zoe
starting time: Wed Mar 6 14:58:52 MSK 2013
pwd: /tmp/asyavuz/ITDummy
running Psi-blast .....
running zalign .....
./zalign 7.01 0.55 0.66 1.6 -0.99 0.31 0.19 0 1.0 0.39 0.19
==>2b38A 1ooeA 8.08436178310613 4.14053427379692
2b38A 1ooeA 46 33
score_flag=1
ending time: Wed Mar 6 15:07:26 MSK 2013
start serial threading wPPA
/tmp/asyavuz/ITDummy
/home/asyavuz/Dummy/wPPA_Dummy
Exception in thread "main" java.io.FileNotFoundException: /usr/local/I-TASSER/MTX/2i61A.mtx (Too many open files)
at java.io.FileInputStream.open(Native Method)
at java.io.FileInputStream.(FileInputStream.java:138)
at java.io.FileInputStream.(FileInputStream.java:97)
at java.io.FileReader.(FileReader.java:58)
at a.a(a.java)
at a.main(a.java)
hostname: zoe
starting time: Wed Mar 6 15:07:27 MSK 2013
pwd: /tmp/asyavuz/ITDummy
running Psi-blast .....
ending time: Wed Mar 6 15:15:45 MSK 2013
start serial threading wdPPA
/tmp/asyavuz/ITDummy
/home/asyavuz/Dummy/wdPPA_Dummy