Your publication in Nature protocol said "Despite of dependence of modeling results on templates, we note significant advantage of I-TASSER methodology in both template structure refinement and ab initio structure modeling for small proteins"
Taking job S134720 as an example, we can't get good results and I think the reason was that the templates were not so good. In this condition, should I choose quark for ab initio modeling?
For ab initio modeling, I-Tasser and QUARK, which one is better?
Thank you and looking forward to your reply.