Hi,
I want to model a protein without using homologues with 30 % or higher identity. So it is not clear if I have to both use -temp_excl excl.txt and the flags -homoflag benchmark -idcut XX. I have tried to run it with only -temp_excl, but it seems it only excludes the specific template I defined in excl.txt. That is, in init.dat, I still see that it has used a template with high identity (70 %) to model my protein. Also, should I use the same exclusion parameter in excl.txt and idcut?
For example, in my excl.txt, I have:
5ey6:A 30
and I am using -homoflag benchmark -idcut 0.3
Is that correct?
I really appreciate your help.
Erica