Greetings,
I need to design a 3D small pepitide that could mimetize the interaction of a homodimeric protein that performs an allosteric switch binding in a heterodimeric receptor membrane-protein. I docked the protein to the receptor and submitted the complex (PDB file) to EvoDesign server somo weeks ago and I am waiting the job finiches the calculation. I am a completely beginner in "De novo" design, and that is my first time using the EvoDesign tool, so any clues how to proceed and to analyze my results are very welcome!
Sincerely