Hello,
I have the standalone version installed and am running I-TASSER properly. All parameters are shown. However, I am getting multiple Warnings/Errors at the blastpgp step. Can anyone offer any assistance or a way to correct what is going wrong. See below:
Your setting is:
-libdir =/opt/I-TASSER
-seqname =seq
-datadir =/home2/chiraagk/Desktop/Eagle
-usrname =chiraagk
-runstyle =parallel
-homoflag =real
-idcut =1
-ntemp =20
-nmodel =5
1. make seq.txt and rmsinp
2.1 run Psi-blast
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|302858523
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|282598616
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|333495728
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339754482
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|354998524
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|192824189
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|382939954
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|342221155
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|338827040
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339752291
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|380886125
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339753972
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|354996555
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|392242877
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|29566030
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339752869
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|323126183
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339751873
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339753650
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339753564
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|203463369
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|344055447
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|192823912
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|354996757
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|342221250
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|12657863
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|374427705
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|157786485
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|354998618
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339784799
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|284794781
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|354996961
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|157786402
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339783497
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|347450420
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|192823824
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|347450213
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|390013417
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|392201507
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339784021
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|282721289
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|192824096
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|365869822
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|192824007
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|342240106
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339783592
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|317508155
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|109521489
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|354464411
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339784247
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339784134
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|354463913
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|206599574
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|304360788
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339755797
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|347450135
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339783412
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|304360883
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|374427815
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339783936
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|9625442
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|375281867
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|194302980
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|388570532
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339781239
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|342240022
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339753090
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|109392217
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339753765
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|157311220
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339782267
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|345102650
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|304360975
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339780904
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339753197
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|206600110
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|347450327
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|342239678
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|353733008
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|29565799
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|392078172
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|392063667
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|206599910
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339782855
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|318065823
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339752979
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|9630395
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|291084888
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339751968
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|109393420
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339781545
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|204305867
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|203459085
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|29566721
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|206600215
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|392123460
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|392189987
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|29566354
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|382940943
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|18496915
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|18496915
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|169628896
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|29565914
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|194303089
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|353450512
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|354996238
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|29566790
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339752099
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339783724
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|339782387
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|354997064
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|392195816
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|353450035
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|365871938
[blastpgp] WARNING: [000.000] Failed to retrieve sequence gi|118463115
2.2 run psipred
Weight file read error!
Bad psipred pass1 file format!
cp: cannot stat `protein.ss2': No such file or directory