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I-TASSER and QUARK decoys for single domain proteins in CASP10

This page includes structural decoys generated by I-TASSER and QUARK servers during CASP10, for all proteins that the I-TASSER server deemed to be of a single domain. It only contains the proteins that have the experimental structure solved before the CASP10 conference. The data demonstrated a big gap between the submitted model and the best model in the decoy pool. As an unsolved problem, it is extremely challenging to select (or refine) the best models which are the closest to the experimental structures.

Reference: Yang Zhang, Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10. Proteins: Structure, Function, and Bioinformatics, 2014, 82 (Suppl 2), 175-187 (download the PDF file and Support Information).



[CASP8 Decoys] [CASP9 Decoys] [CASP10 Decoys] [CASP11 Decoys] [Decoy Hompage]

Target ID #decoys Length Type Native Sequence Zhang-Server_model1 (TM-score) QUARK_model1 (TM-score) Decoys (Best TM-score)
T0644 525 166 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.865) QUARK_model1.pdb (0.863) T0644.tar.bz2 (0.888)
T0645 225 537 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.929) QUARK_model1.pdb (0.932) T0645.tar.bz2 (0.935)
T0649 825 210 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.369) QUARK_model1.pdb (0.381) T0649.tar.bz2 (0.448)
T0650 225 346 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.877) QUARK_model1.pdb (0.958) T0650.tar.bz2 (0.960)
T0654 375 166 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.820) QUARK_model1.pdb (0.820) T0654.tar.bz2 (0.832)
T0655 375 182 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.749) QUARK_model1.pdb (0.742) T0655.tar.bz2 (0.766)
T0657 375 154 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.831) QUARK_model1.pdb (0.836) T0657.tar.bz2 (0.839)
T0659 375 85 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.906) QUARK_model1.pdb (0.920) T0659.tar.bz2 (0.927)
T0662 145 79 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.796) QUARK_model1.pdb (0.792) T0662.tar.bz2 (0.805)
T0664 225 540 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.934) QUARK_model1.pdb (0.935) T0664.tar.bz2 (0.940)
T0665 375 67 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.739) QUARK_model1.pdb (0.722) T0665.tar.bz2 (0.743)
T0667 375 194 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.803) QUARK_model1.pdb (0.804) T0667.tar.bz2 (0.828)
T0669 375 109 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.606) QUARK_model1.pdb (0.589) T0669.tar.bz2 (0.723)
T0672 225 335 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.784) QUARK_model1.pdb (0.785) T0672.tar.bz2 (0.793)
T0673 825 88 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.350) QUARK_model1.pdb (0.348) T0673.tar.bz2 (0.407)
T0675 375 75 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.346) QUARK_model1.pdb (0.344) T0675.tar.bz2 (0.375)
T0676 825 204 Very Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.510) QUARK_model1.pdb (0.515) T0676.tar.bz2 (0.548)
T0678 825 161 Very Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.362) QUARK_model1.pdb (0.375) T0678.tar.bz2 (0.526)
T0679 375 223 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.798) QUARK_model1.pdb (0.786) T0679.tar.bz2 (0.815)
T0680 825 119 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.513) QUARK_model1.pdb (0.514) T0680.tar.bz2 (0.748)
T0681 375 224 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.872) QUARK_model1.pdb (0.872) T0681.tar.bz2 (0.891)
T0683 225 403 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.889) QUARK_model1.pdb (0.887) T0683.tar.bz2 (0.896)
T0688 370 196 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.869) QUARK_model1.pdb (0.865) T0688.tar.bz2 (0.874)
T0689 375 234 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.927) QUARK_model1.pdb (0.925) T0689.tar.bz2 (0.935)
T0691 825 163 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.500) QUARK_model1.pdb (0.454) T0691.tar.bz2 (0.526)
T0692 185 473 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.942) QUARK_model1.pdb (0.941) T0692.tar.bz2 (0.944)
T0703 350 272 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.895) QUARK_model1.pdb (0.884) T0703.tar.bz2 (0.899)
T0704 335 254 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.838) QUARK_model1.pdb (0.834) T0704.tar.bz2 (0.846)
T0708 375 196 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.891) QUARK_model1.pdb (0.891) T0708.tar.bz2 (0.906)
T0714 200 88 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.911) QUARK_model1.pdb (0.895) T0714.tar.bz2 (0.912)
T0716 375 71 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.685) QUARK_model1.pdb (0.700) T0716.tar.bz2 (0.740)
T0721 185 301 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.872) QUARK_model1.pdb (0.875) T0721.tar.bz2 (0.885)
T0722 825 152 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.513) QUARK_model1.pdb (0.494) T0722.tar.bz2 (0.617)
T0723 150 132 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.859) QUARK_model1.pdb (0.763) T0723.tar.bz2 (0.876)
T0733 225 390 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.863) QUARK_model1.pdb (0.860) T0733.tar.bz2 (0.870)
T0749 225 449 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.963) QUARK_model1.pdb (0.963) T0749.tar.bz2 (0.964)
T0752 375 156 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.874) QUARK_model1.pdb (0.866) T0752.tar.bz2 (0.900)
T0753 375 109 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.790) QUARK_model1.pdb (0.780) T0753.tar.bz2 (0.801)
T0757 160 247 Trivial native.pdb seq.txt Zhang-Server_model1.pdb (0.893) QUARK_model1.pdb (0.893) T0757.tar.bz2 (0.902)
R0001 675 184 Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.202) QUARK_model1.pdb (0.209) R0001.tar.bz2 (0.244)
R0008 600 128 Easy native.pdb seq.txt Zhang-Server_model1.pdb (0.519) QUARK_model1.pdb (0.529) R0008.tar.bz2 (0.614)
R0014 675 136 Very Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.393) QUARK_model1.pdb (0.257) R0014.tar.bz2 (0.482)
R0018 675 124 Very Hard native.pdb seq.txt Zhang-Server_model1.pdb (0.366) QUARK_model1.pdb (0.345) R0018.tar.bz2 (0.523)
average 423 212 (0.726) (0.720) (0.765)


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