Home Research Services Publications People Teaching Job Opening News Lab Only
Online Services

I-TASSER QUARK LOMETS COACH COFACTOR MUSTER SEGMER FG-MD ModRefiner REMO SPRING COTH BSpred SVMSEQ ANGLOR BSP-SLIM SAXSTER ThreaDom ThreaDomEx EvoDesign GPCR-I-TASSER BindProf BindProfX ResQ IonCom STRUM

TM-score TM-align MMalign NWalign EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot I-TASSER-MR NeBcon

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP TM-fold DECOYS POTENTIAL RW HPSF CASP7 CASP8 CASP9 CASP10 CASP11 CASP12




I-TASSER Decoy Set-I

This page contains the whole-set atomic structure decoys of 56 non-homologous small proteins, together with the models selected by the SPICKER clustering program. The backbone structures were generated by the I-TASSER ab initio modeling; the side-chain atoms were added using Pulchra (see Wu S, Skolnick J, Zhang Y: Ab initio modeling of small proteins by iterative TASSER simulations. BMC Biology 2007, 5: 17).

Explanations:

ID Native Length Decoy_pdb (#) Decoy_Spicker Best_decoy (R/TM) Closc (R/TM)
1abv_ native 103 Decoy_pdb (12500) Decoy_spicker Best_decoy (4.81/0.509) Closc.pdb (13.96/0.295)
1af7__ native 72 Decoy_pdb (12499) Decoy_spicker Best_decoy (2.92/0.617) Closc.pdb (4.85/0.460)
1ah9_ native 63 Decoy_pdb (27498) Decoy_spicker Best_decoy (1.88/0.749) Closc.pdb (4.70/0.508)
1aoy_ native 65 Decoy_pdb (32000) Decoy_spicker Best_decoy (2.41/0.733) Closc.pdb (4.76/0.660)
1b4bA native 71 Decoy_pdb (12500) Decoy_spicker Best_decoy (4.20/0.466) Closc.pdb (6.58/0.410)
1b72A native 49 Decoy_pdb (12500) Decoy_spicker Best_decoy (2.36/0.846) Closc.pdb (3.14/0.664)
1bm8_ native 99 Decoy_pdb (20000) Decoy_spicker Best_decoy (6.67/0.392) Closc.pdb (7.37/0.432)
1bq9A native 53 Decoy_pdb (20000) Decoy_spicker Best_decoy (3.98/0.461) Closc.pdb (7.86/0.369)
1cewI native 108 Decoy_pdb (19830) Decoy_spicker Best_decoy (3.20/0.756) Closc.pdb (3.87/0.717)
1cqkA native 101 Decoy_pdb (19999) Decoy_spicker Best_decoy (1.40/0.884) Closc.pdb (1.72/0.854)
1csp_ native 67 Decoy_pdb (12500) Decoy_spicker Best_decoy (1.87/0.759) Closc.pdb (2.35/0.725)
1cy5A native 92 Decoy_pdb (32000) Decoy_spicker Best_decoy (1.22/0.903) Closc.pdb (1.62/0.870)
1dcjA_ native 73 Decoy_pdb (20000) Decoy_spicker Best_decoy (9.31/0.381) Closc.pdb (10.57/0.347)
1di2A_ native 69 Decoy_pdb (20000) Decoy_spicker Best_decoy (1.32/0.858) Closc.pdb (2.34/0.799)
1dtjA_ native 74 Decoy_pdb (20000) Decoy_spicker Best_decoy (1.58/0.841) Closc.pdb (1.88/0.806)
1egxA native 115 Decoy_pdb (20000) Decoy_spicker Best_decoy (1.93/0.840) Closc.pdb (2.60/0.774)
1fadA native 92 Decoy_pdb (12500) Decoy_spicker Best_decoy (2.95/0.654) Closc.pdb (3.66/0.577)
1fo5A native 85 Decoy_pdb (20000) Decoy_spicker Best_decoy (3.57/0.576) Closc.pdb (3.91/0.536)
1g1cA native 98 Decoy_pdb (19997) Decoy_spicker Best_decoy (2.16/0.801) Closc.pdb (2.65/0.779)
1gjxA native 77 Decoy_pdb (12500) Decoy_spicker Best_decoy (5.01/0.512) Closc.pdb (7.32/0.456)
1gnuA native 117 Decoy_pdb (17533) Decoy_spicker Best_decoy (4.06/0.644) Closc.pdb (8.71/0.522)
1gpt_ native 47 Decoy_pdb (32000) Decoy_spicker Best_decoy (2.79/0.569) Closc.pdb (5.31/0.529)
1gyvA native 117 Decoy_pdb (11508) Decoy_spicker Best_decoy (3.02/0.778) Closc.pdb (3.50/0.740)
1hbkA native 89 Decoy_pdb (20000) Decoy_spicker Best_decoy (2.69/0.721) Closc.pdb (3.48/0.663)
1itpA native 68 Decoy_pdb (12500) Decoy_spicker Best_decoy (4.10/0.530) Closc.pdb (11.26/0.342)
1jnuA native 104 Decoy_pdb (20000) Decoy_spicker Best_decoy (2.30/0.781) Closc.pdb (2.60/0.752)
1kjs_ native 74 Decoy_pdb (20000) Decoy_spicker Best_decoy (4.65/0.494) Closc.pdb (8.44/0.383)
1kviA native 68 Decoy_pdb (20000) Decoy_spicker Best_decoy (1.70/0.787) Closc.pdb (2.25/0.697)
1mkyA3 native 81 Decoy_pdb (12500) Decoy_spicker Best_decoy (3.68/0.556) Closc.pdb (5.17/0.414)
1mla_2 native 70 Decoy_pdb (12500) Decoy_spicker Best_decoy (2.04/0.804) Closc.pdb (3.04/0.622)
1mn8A native 84 Decoy_pdb (12500) Decoy_spicker Best_decoy (5.14/0.443) Closc.pdb (7.05/0.358)
1n0uA4 native 69 Decoy_pdb (12499) Decoy_spicker Best_decoy (3.41/0.597) Closc.pdb (4.57/0.452)
1ne3A native 56 Decoy_pdb (12500) Decoy_spicker Best_decoy (3.16/0.514) Closc.pdb (5.58/0.419)
1no5A native 93 Decoy_pdb (12500) Decoy_spicker Best_decoy (6.12/0.419) Closc.pdb (10.59/0.418)
1npsA native 88 Decoy_pdb (20000) Decoy_spicker Best_decoy (1.81/0.810) Closc.pdb (2.28/0.756)
1o2fB_ native 77 Decoy_pdb (12500) Decoy_spicker Best_decoy (4.08/0.532) Closc.pdb (8.69/0.359)
1of9A native 77 Decoy_pdb (20000) Decoy_spicker Best_decoy (3.06/0.597) Closc.pdb (3.62/0.533)
1ogwA_ native 72 Decoy_pdb (19998) Decoy_spicker Best_decoy (0.96/0.910) Closc.pdb (1.29/0.855)
1orgA native 118 Decoy_pdb (20000) Decoy_spicker Best_decoy (2.05/0.830) Closc.pdb (2.66/0.757)
1pgx_ native 59 Decoy_pdb (20000) Decoy_spicker Best_decoy (2.79/0.552) Closc.pdb (3.51/0.504)
1r69_ native 61 Decoy_pdb (20000) Decoy_spicker Best_decoy (1.30/0.846) Closc.pdb (1.97/0.754)
1sfp_ native 111 Decoy_pdb (19985) Decoy_spicker Best_decoy (4.83/0.734) Closc.pdb (5.26/0.746)
1shfA native 59 Decoy_pdb (20000) Decoy_spicker Best_decoy (1.18/0.855) Closc.pdb (1.55/0.789)
1sro_ native 71 Decoy_pdb (20000) Decoy_spicker Best_decoy (2.59/0.682) Closc.pdb (3.54/0.648)
1ten_ native 87 Decoy_pdb (20000) Decoy_spicker Best_decoy (1.43/0.865) Closc.pdb (1.84/0.823)
1tfi_ native 47 Decoy_pdb (32000) Decoy_spicker Best_decoy (2.49/0.579) Closc.pdb (4.74/0.515)
1thx_ native 108 Decoy_pdb (32000) Decoy_spicker Best_decoy (1.71/0.863) Closc.pdb (2.32/0.801)
1tif_ native 59 Decoy_pdb (12500) Decoy_spicker Best_decoy (6.47/0.378) Closc.pdb (7.45/0.326)
1tig_ native 88 Decoy_pdb (12500) Decoy_spicker Best_decoy (3.00/0.633) Closc.pdb (9.58/0.424)
1vcc_ native 76 Decoy_pdb (20000) Decoy_spicker Best_decoy (4.52/0.476) Closc.pdb (6.51/0.403)
256bA native 106 Decoy_pdb (20000) Decoy_spicker Best_decoy (2.75/0.805) Closc.pdb (3.45/0.760)
2a0b_ native 118 Decoy_pdb (32000) Decoy_spicker Best_decoy (2.05/0.846) Closc.pdb (2.65/0.784)
2cr7A native 60 Decoy_pdb (12500) Decoy_spicker Best_decoy (2.62/0.659) Closc.pdb (3.64/0.479)
2f3nA native 65 Decoy_pdb (19999) Decoy_spicker Best_decoy (1.47/0.801) Closc.pdb (1.94/0.726)
2pcy_ native 99 Decoy_pdb (20000) Decoy_spicker Best_decoy (3.87/0.631) Closc.pdb (4.71/0.627)
2reb_2 native 60 Decoy_pdb (12500) Decoy_spicker Best_decoy (4.30/0.409) Closc.pdb (6.88/0.324)
Average 80 (3.124/0.6691) (4.809/0.5901)

yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218