I am Using LOMETS as a part of a larger pipeline for protein structure prediction, the alignments produced by LOMETS are ranked (At most the top 20 alignments are ranked) but for the individual aligners (PPAS, Env-PPAS, MUSTER etc.) there is another ranking and some homologs are detected there which does not appear in the top 20 ranking. Which function is used for ranking the models in the top 20? I would like to be able to generate a total ranking of the "best" alignment for each template, and as such I'd appreciate a way to reproduce the top 20 ranking but for all detected templates.