Does it necessary if I run a molecular dynamics simulation project?

Generally,after I get the results from I-TASSER,does it necessary if I run a molecular dynamics simulation(MD) project by NAMD or Gromacs?
Besides,my target is a transmembrane protein,of course the I-TASSER results would not include cell membrane,people ofen use NAMD or Gromacs to add cell membrane and then run MD,whether your lab have this kind of solution?
waiting for your help and best wishes~