Dear, I finish running the last step for the I-TASSER, here is the result:
-libdir =/home/rcrg4/class_project/tool/I-TASSER
-seqname =seq.fasta
-datadir =/home/rcrg4/class_project/tool/I-TASSER/data
-usrname =rcrg4
-runstyle =parallel
-homoflag =real
-idcut =1
-ntemp =20
-nmodel =5
1. make seq.txt and rmsinp
2.1 run Psi-blast
2.2 run psipred
2.3 run solve
2.3 run solve
2.4 run pairmod
2.4.1 removing homology templates based on real and 1
2.4.2 running pair ................
/bin/cp: cannot stat `pair.3': No such file or directory
/bin/cp: cannot stat `pair.1': No such file or directory
3.1 do threading
start threading QQQ
hostname: mu-083194
starting time: Thu Oct 27 21:31:44 CDT 2011
pwd: /tmp/rcrg4/ITseq.fasta
running Psi-blast .....
running zalign .....
./zalign 7.01 0.55 0.66 1.6 -0.99 0.31 0.19 0 1.0 0.39 0.19
==>3pqjA 3pqjA 18.6144408646455 14.1603979548676
3pqjA 3pqjA 68 68
score_flag=1
ending time: Thu Oct 27 22:30:02 CDT 2011
start threading GGGd
hostname: mu-083194
starting time: Thu Oct 27 22:30:11 CDT 2011
pwd: /tmp/rcrg4/ITseq.fasta
running zalign .....
ending time: Thu Oct 27 22:43:27 CDT 2011
start threading GGGf
hostname: mu-083194
starting time: Thu Oct 27 22:43:35 CDT 2011
pwd: /tmp/rcrg4/ITseq.fasta
running zalign .....
ending time: Thu Oct 27 22:49:59 CDT 2011
start threading NNNd
hostname: mu-083194
starting time: Thu Oct 27 22:50:10 CDT 2011
pwd: /tmp/rcrg4/ITseq.fasta
running zalign .....
ending time: Thu Oct 27 22:53:36 CDT 2011
start threading SSSc
hostname: mu-083194
and it did the simulation parrallel , then it did not work anymore, the process was not running anymore. What's that problem? Does that mean my computer has not enough space?
And I try to kill the process, but after that, I find another problem, see:
./runI-TASSER.pl -libdir /home/rcrg4/class_project/tool/I-TASSER -seqname seq.fasta -datadir /home/rcrg4/class_project/tool/I-TASSER/data -usrname rcrg4 -runstyle parallel
and
[2]+ Done ./runI-TASSER.pl -libdir /home/rcrg4/class_project/tool/I-TASSER -seqname seq.fasta -datadir /home/rcrg4/class_project/tool/I-TASSER/data -usrname rcrg4 -runstyle parallel
It will finish immediately, should I delete some of the results for last running?
Thank you very much!