Hello,
So I ran a 120 length amino acid sequence on QUARK for ab-initio structure prediction:
http://zhanglab.ccmb.med.umich.edu/QUARK/output/Q31876/
I had tried on QUARK as I was not getting good score using i-tasser. i-tasser results are here:
http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S178403/
Now, I did not get good score from QUARK either (TM < 0.5).
So can you suggest how else I can build a reliable model for this sequence?
Is there any other technique/method/server/software I should use?
Thank you very much!