Dear Colleagues,
I am running a locally installed version of I-TASSER. The command-line version executed to completion, and produced about 194 output files, 54 of them with .bz2 extension. Some models were generated, but I do not understand how to tell what were the PDB templates choses for modelling. For each search engine, I can see the PDB IDs of the best matches, but I do not see the step when some of those were selected for modelling. All I want is the identity of the best and second-best template.
Please note that there is no clear homolog of my sequence in PDB (not by psi-blast or hhpred at least), and, to reiterate, I want to know what is the consensus target structure (or several?) that I-TASSER chooses for modelling. There must be a record of this determination somewhere in the files!
Any advice would be appreciated.
Thank you!
Arcady