I am unable to get Option 1- specify template with alignment to work,
The job ID was S338821.
The aligned fasta + pdb file submitted is enclosed. It was formatted as per recommendation.
The error message says:
REMARK : The file contains the query-template alignment specified by the user.
REMARK : Read about assigning restraints during the structure modeling at: http://zhanglab.ccmb.med.umich.edu/I-TASSER/restraint.html
PDB formatted alignment file specified by the user
REMARK : Column 1 - 30 present Atom & Residue records of query sequence.
REMARK : Column 31 - 54 present XYZ coordinates of query sequence based on the threading alignment.
REMARK : Column 55 - 59 present residue number of user specified template protein.
REMARK : Column 60 - 59 present residue name of user specified template protein.
Error: Number of aligned residues are : 0