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BioLiP
Download all results in tab-seperated text for 284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 3jcu:g (3.2) BS05 CHL ? GO:0009416 ... P12333 27251276
    202 3jcu:g (3.2) BS06 CHL ? GO:0009416 ... P12333 27251276
    203 3jcu:g (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    204 3jcu:g (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    205 3jcu:g (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    206 3jcu:g (3.2) BS10 CLA ? GO:0009416 ... P12333 27251276
    207 3jcu:g (3.2) BS11 CLA ? GO:0009416 ... P12333 27251276
    208 3jcu:g (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    209 3jcu:g (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    210 3jcu:g (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    211 3jcu:g (3.2) BS15 CHL ? GO:0009416 ... P12333 27251276
    212 3jcu:g (3.2) BS16 CHL ? GO:0009416 ... P12333 27251276
    213 3jcu:h (3.2) BS01 CLA ? GO:0009507 ... P05146 27251276
    214 3jcu:h (3.2) BS02 CLA ? GO:0009507 ... P05146 27251276
    215 3jcu:h (3.2) BS03 CLA ? GO:0009507 ... P05146 27251276
    216 3jcu:h (3.2) BS04 CLA ? GO:0009507 ... P05146 27251276
    217 3jcu:i (3.2) BS01 CLA ? GO:0005737 ... P62103 27251276
    218 3jcu:i (3.2) BS02 CLA ? GO:0005737 ... P62103 27251276
    219 3jcu:k (3.2) BS01 CLA ? GO:0005737 ... P12163 27251276
    220 3jcu:k (3.2) BS02 CLA ? GO:0005737 ... P12163 27251276
    221 3jcu:k (3.2) BS03 CLA ? GO:0005737 ... P12163 27251276
    222 3jcu:n (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    223 3jcu:n (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    224 3jcu:n (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    225 3jcu:n (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    226 3jcu:n (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    227 3jcu:n (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    228 3jcu:n (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    229 3jcu:n (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    230 3jcu:n (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    231 3jcu:n (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    232 3jcu:n (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    233 3jcu:n (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    234 3jcu:n (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    235 3jcu:n (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    236 3jcu:n (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    237 3jcu:n (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    238 3jcu:r (3.2) BS01 CHL ? GO:0009416 ... F2Z293 27251276
    239 3jcu:r (3.2) BS02 CLA ? GO:0009416 ... F2Z293 27251276
    240 3jcu:r (3.2) BS03 CLA ? GO:0009416 ... F2Z293 27251276
    241 3jcu:r (3.2) BS04 CLA ? GO:0009416 ... F2Z293 27251276
    242 3jcu:r (3.2) BS05 CLA ? GO:0009416 ... F2Z293 27251276
    243 3jcu:r (3.2) BS06 CHL ? GO:0009416 ... F2Z293 27251276
    244 3jcu:r (3.2) BS07 CHL ? GO:0009416 ... F2Z293 27251276
    245 3jcu:r (3.2) BS08 CHL ? GO:0009416 ... F2Z293 27251276
    246 3jcu:r (3.2) BS09 CLA ? GO:0009416 ... F2Z293 27251276
    247 3jcu:r (3.2) BS10 CLA ? GO:0009416 ... F2Z293 27251276
    248 3jcu:r (3.2) BS11 CLA ? GO:0009416 ... F2Z293 27251276
    249 3jcu:r (3.2) BS12 CLA ? GO:0009416 ... F2Z293 27251276
    250 3jcu:r (3.2) BS13 CLA ? GO:0009416 ... F2Z293 27251276
    251 3jcu:r (3.2) BS14 CLA ? GO:0009416 ... F2Z293 27251276
    252 3jcu:s (3.2) BS01 CLA N/A GO:0009765 ... N/A 27251276
    253 3jcu:s (3.2) BS02 CHL N/A GO:0009765 ... N/A 27251276
    254 3jcu:s (3.2) BS03 CHL N/A GO:0009765 ... N/A 27251276
    255 3jcu:s (3.2) BS04 CLA N/A GO:0009765 ... N/A 27251276
    256 3jcu:s (3.2) BS05 CLA N/A GO:0009765 ... N/A 27251276
    257 3jcu:s (3.2) BS06 CLA N/A GO:0009765 ... N/A 27251276
    258 3jcu:s (3.2) BS07 CHL N/A GO:0009765 ... N/A 27251276
    259 3jcu:s (3.2) BS08 CHL N/A GO:0009765 ... N/A 27251276
    260 3jcu:s (3.2) BS09 CHL N/A GO:0009765 ... N/A 27251276
    261 3jcu:s (3.2) BS10 CLA N/A GO:0009765 ... N/A 27251276
    262 3jcu:s (3.2) BS11 CLA N/A GO:0009765 ... N/A 27251276
    263 3jcu:s (3.2) BS12 CLA N/A GO:0009765 ... N/A 27251276
    264 3jcu:s (3.2) BS13 CLA N/A GO:0009765 ... N/A 27251276
    265 3jcu:s (3.2) BS14 CLA N/A GO:0009765 ... N/A 27251276
    266 3jcu:s (3.2) BS15 CLA N/A GO:0009765 ... N/A 27251276
    267 3jcu:w (3.2) BS01 CLA ? GO:0009507 ... Q41387 27251276
    268 3jcu:y (3.2) BS01 CHL ? GO:0009416 ... P12333 27251276
    269 3jcu:y (3.2) BS02 CHL ? GO:0009416 ... P12333 27251276
    270 3jcu:y (3.2) BS03 CHL ? GO:0009416 ... P12333 27251276
    271 3jcu:y (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    272 3jcu:y (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    273 3jcu:y (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    274 3jcu:y (3.2) BS07 CHL ? GO:0009416 ... P12333 27251276
    275 3jcu:y (3.2) BS08 CHL ? GO:0009416 ... P12333 27251276
    276 3jcu:y (3.2) BS09 CHL ? GO:0009416 ... P12333 27251276
    277 3jcu:y (3.2) BS10 CHL ? GO:0009416 ... P12333 27251276
    278 3jcu:y (3.2) BS11 CHL ? GO:0009416 ... P12333 27251276
    279 3jcu:y (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    280 3jcu:y (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    281 3jcu:y (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    282 3jcu:y (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    283 3jcu:y (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    284 3jcu:z (3.2) BS01 CLA ? GO:0009507 ... Q9M3M6 27251276
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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