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BioLiP
Download all results in tab-seperated text for 124 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1smy:A (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    2 1smy:A (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    3 1smy:A (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    4 1smy:A (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    5 1smy:A (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    6 1smy:B (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    7 1smy:B (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    8 1smy:B (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    9 1smy:B (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    10 1smy:B (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    11 1smy:B (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    12 1smy:B (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    13 1smy:B (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    14 1smy:B (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    15 1smy:C (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    16 1smy:C (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    17 1smy:C (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    18 1smy:C (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    19 1smy:C (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    20 1smy:C (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    21 1smy:C (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    22 1smy:C (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    23 1smy:C (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    24 1smy:C (2.7) BS10 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    25 1smy:C (2.7) BS11 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    26 1smy:C (2.7) BS12 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    27 1smy:C (2.7) BS13 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    28 1smy:C (2.7) BS14 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    29 1smy:C (2.7) BS15 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    30 1smy:C (2.7) BS16 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    31 1smy:C (2.7) BS17 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    32 1smy:C (2.7) BS18 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    33 1smy:C (2.7) BS19 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    34 1smy:C (2.7) BS20 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    35 1smy:C (2.7) BS21 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    36 1smy:C (2.7) BS22 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    37 1smy:C (2.7) BS23 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    38 1smy:C (2.7) BS24 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    39 1smy:C (2.7) BS25 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    40 1smy:C (2.7) BS26 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    41 1smy:C (2.7) BS27 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    42 1smy:C (2.7) BS28 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    43 1smy:C (2.7) BS29 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    44 1smy:C (2.7) BS30 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    45 1smy:C (2.7) BS31 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    46 1smy:C (2.7) BS32 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    47 1smy:C (2.7) BS33 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    48 1smy:C (2.7) BS34 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49 1smy:C (2.7) BS35 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    50 1smy:C (2.7) BS36 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    51 1smy:D (2.7) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    52 1smy:D (2.7) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    53 1smy:D (2.7) BS03 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    54 1smy:D (2.7) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    55 1smy:D (2.7) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    56 1smy:D (2.7) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    57 1smy:D (2.7) BS07 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    58 1smy:D (2.7) BS08 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    59 1smy:D (2.7) BS09 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    60 1smy:D (2.7) BS10 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    61 1smy:D (2.7) BS11 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    62 1smy:D (2.7) BS12 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    63 1smy:D (2.7) BS13 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    64 1smy:D (2.7) BS14 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    65 1smy:D (2.7) BS15 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    66 1smy:D (2.7) BS16 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    67 1smy:D (2.7) BS17 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    68 1smy:D (2.7) BS18 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    69 1smy:D (2.7) BS19 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    70 1smy:D (2.7) BS20 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    71 1smy:D (2.7) BS21 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    72 1smy:D (2.7) BS22 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    73 1smy:D (2.7) BS23 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    74 1smy:D (2.7) BS24 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    75 1smy:D (2.7) BS25 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    76 1smy:D (2.7) BS26 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    77 1smy:D (2.7) BS27 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    78 1smy:D (2.7) BS28 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    79 1smy:D (2.7) BS29 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    80 1smy:D (2.7) BS30 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    81 1smy:D (2.7) BS31 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    82 1smy:D (2.7) BS32 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    83 1smy:D (2.7) BS33 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    84 1smy:D (2.7) BS34 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    85 1smy:D (2.7) BS35 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    86 1smy:D (2.7) BS36 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    87 1smy:D (2.7) BS37 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    88 1smy:D (2.7) BS38 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    89 1smy:D (2.7) BS39 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    90 1smy:D (2.7) BS40 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    91 1smy:D (2.7) BS41 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    92 1smy:D (2.7) BS42 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    93 1smy:D (2.7) BS43 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    94 1smy:D (2.7) BS44 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    95 1smy:D (2.7) BS45 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    96 1smy:D (2.7) BS46 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    97 1smy:D (2.7) BS47 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    98 1smy:D (2.7) BS48 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    99 1smy:D (2.7) BS49 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    100 1smy:D (2.7) BS50 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    101 1smy:D (2.7) BS51 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    102 1smy:D (2.7) BS52 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    103 1smy:D (2.7) BS53 G4P 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    104 1smy:E (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    105 1smy:E (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    106 1smy:E (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    107 1smy:F (2.7) BS01 MG ? GO:0003677 ... Q72L95 15109491
    108 1smy:F (2.7) BS02 MG ? GO:0003677 ... Q72L95 15109491
    109 1smy:F (2.7) BS03 MG ? GO:0003677 ... Q72L95 15109491
    110 1smy:F (2.7) BS04 MG ? GO:0003677 ... Q72L95 15109491
    111 1smy:F (2.7) BS05 MG ? GO:0003677 ... Q72L95 15109491
    112 1smy:F (2.7) BS06 MG ? GO:0003677 ... Q72L95 15109491
    113 1smy:F (2.7) BS07 MG ? GO:0003677 ... Q72L95 15109491
    114 1smy:F (2.7) BS08 MG ? GO:0003677 ... Q72L95 15109491
    115 1smy:F (2.7) BS09 MG ? GO:0003677 ... Q72L95 15109491
    116 1smy:F (2.7) BS10 MG ? GO:0003677 ... Q72L95 15109491
    117 1smy:F (2.7) BS11 MG ? GO:0003677 ... Q72L95 15109491
    118 1smy:F (2.7) BS12 MG ? GO:0003677 ... Q72L95 15109491
    119 1smy:F (2.7) BS13 MG ? GO:0003677 ... Q72L95 15109491
    120 1smy:F (2.7) BS14 MG ? GO:0003677 ... Q72L95 15109491
    121 1smy:M (2.7) BS01 G4P 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    122 1smy:N (2.7) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    123 1smy:N (2.7) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    124 1smy:N (2.7) BS03 G4P 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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