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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2dyr:A (1.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17332748
    2 2dyr:A (1.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17332748
    3 2dyr:A (1.8) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    4 2dyr:A (1.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    5 2dyr:A (1.8) BS05 PGV 7.1.1.9 GO:0004129 ... P00396 17332748
    6 2dyr:A (1.8) BS06 PGV 7.1.1.9 GO:0004129 ... P00396 17332748
    7 2dyr:A (1.8) BS07 CDL 7.1.1.9 GO:0004129 ... P00396 17332748
    8 2dyr:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17332748
    9 2dyr:B (1.8) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17332748
    10 2dyr:B (1.8) BS03 PSC 7.1.1.9 GO:0004129 ... P68530 17332748
    11 2dyr:B (1.8) BS04 CDL 7.1.1.9 GO:0004129 ... P68530 17332748
    12 2dyr:C (1.8) BS01 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    13 2dyr:C (1.8) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 17332748
    14 2dyr:C (1.8) BS03 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    15 2dyr:C (1.8) BS04 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    16 2dyr:C (1.8) BS05 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    17 2dyr:C (1.8) BS06 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    18 2dyr:C (1.8) BS07 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    19 2dyr:C (1.8) BS08 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    20 2dyr:C (1.8) BS09 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    21 2dyr:E (1.8) BS01 PSC 1.9.3.1 GO:0005743 ... P00426 17332748
    22 2dyr:F (1.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17332748
    23 2dyr:G (1.8) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17332748
    24 2dyr:G (1.8) BS02 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    25 2dyr:G (1.8) BS03 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    26 2dyr:G (1.8) BS04 CDL 1.9.3.1 GO:0005743 ... P07471 17332748
    27 2dyr:G (1.8) BS05 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    28 2dyr:I (1.8) BS01 PSC 1.9.3.1 GO:0005739 ... P04038 17332748
    29 2dyr:M (1.8) BS01 PGV 1.9.3.1 GO:0005751 ... P10175 17332748
    30 2dyr:M (1.8) BS02 DMU 1.9.3.1 GO:0005751 ... P10175 17332748
    31 2dyr:N (1.8) BS01 CDL 7.1.1.9 GO:0004129 ... P00396 17332748
    32 2dyr:N (1.8) BS02 CU 7.1.1.9 GO:0004129 ... P00396 17332748
    33 2dyr:N (1.8) BS03 MG 7.1.1.9 GO:0004129 ... P00396 17332748
    34 2dyr:N (1.8) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    35 2dyr:N (1.8) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    36 2dyr:N (1.8) BS06 PGV 7.1.1.9 GO:0004129 ... P00396 17332748
    37 2dyr:N (1.8) BS07 PSC 7.1.1.9 GO:0004129 ... P00396 17332748
    38 2dyr:N (1.8) BS08 PGV 7.1.1.9 GO:0004129 ... P00396 17332748
    39 2dyr:O (1.8) BS01 CDL 7.1.1.9 GO:0004129 ... P68530 17332748
    40 2dyr:O (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P68530 17332748
    41 2dyr:O (1.8) BS03 CUA 7.1.1.9 GO:0004129 ... P68530 17332748
    42 2dyr:O (1.8) BS04 PSC 7.1.1.9 GO:0004129 ... P68530 17332748
    43 2dyr:P (1.8) BS01 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    44 2dyr:P (1.8) BS02 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    45 2dyr:P (1.8) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 17332748
    46 2dyr:P (1.8) BS04 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    47 2dyr:P (1.8) BS05 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    48 2dyr:P (1.8) BS06 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    49 2dyr:P (1.8) BS07 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    50 2dyr:P (1.8) BS08 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    51 2dyr:P (1.8) BS09 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    52 2dyr:R (1.8) BS01 PSC 1.9.3.1 GO:0005743 ... P00426 17332748
    53 2dyr:S (1.8) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17332748
    54 2dyr:T (1.8) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17332748
    55 2dyr:T (1.8) BS02 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    56 2dyr:T (1.8) BS03 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    57 2dyr:T (1.8) BS04 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    58 2dyr:T (1.8) BS05 CDL 1.9.3.1 GO:0005743 ... P07471 17332748
    59 2dyr:V (1.8) BS01 PSC 1.9.3.1 GO:0005739 ... P04038 17332748
    60 2dyr:Z (1.8) BS01 DMU 1.9.3.1 GO:0005751 ... P10175 17332748
    61 2dyr:Z (1.8) BS02 PGV 1.9.3.1 GO:0005751 ... P10175 17332748
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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